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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPGAYISLNYHSPTIGMHQNLTVILPEDQSFFNSDTTVKPLKTLMLLHGLSSDETTYMRYTSIERYANEHKLAVIMPNVD
HSAYANMAYGHSYYDYILEVYDYVHQIFPLSKKRDDNFIAGHSMGGYGTIKFALTQGDKFAKAVPLSAVFEAQNLMDLEW
NDFSKEAIIGNLSSVKGTEHDPYYLLDKAVAEDKQIPKLLIMCGKQDFLYQDNLDFIDYLSRINVPYQFEDGPGDHDYAY
WDQAIKRAITWMVND

The query sequence (length=255) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6vhd:A 255 255 1.0000 1.0000 1.0000 0.0 7l0a:A, 7l0a:B, 6vhd:B, 6vhd:C, 6vhd:D, 6vhe:A, 6vhe:B, 6vhe:C, 6vhe:D, 6wcx:A, 6wcx:B, 6wcx:C, 6wcx:D
2 4rot:A 268 254 0.3098 0.2948 0.3110 4.53e-36
3 7xrt:A 268 256 0.2667 0.2537 0.2656 4.08e-14 7xrt:B, 7xrt:C, 7xrt:D, 7xrt:E, 7xrt:F, 7xrt:G, 7xrt:H, 7xrt:I, 7xrt:J, 7xrv:A, 7xrv:B, 7xrv:D, 7xrv:E, 7xrv:F, 7xrv:G, 7xrv:H, 7xrv:I, 7xrv:J
4 5vol:C 268 252 0.2196 0.2090 0.2222 1.35e-10 5vol:A, 5vol:B, 5vol:D, 5vol:E, 5vol:F, 5vol:G, 5vol:H
5 3i6y:A 278 254 0.2353 0.2158 0.2362 2.36e-08 3i6y:B, 3s8y:A
6 8bf3:B 348 255 0.2275 0.1667 0.2275 1.83e-05 8bf3:A
7 1jt2:A 255 255 0.2235 0.2235 0.2235 6.89e-05
8 3e4d:A 278 198 0.1725 0.1583 0.2222 1.95e-04 3e4d:B, 3e4d:C, 3e4d:E, 3e4d:D, 3e4d:F
9 4flm:A 288 240 0.2118 0.1875 0.2250 0.001 4flm:B
10 3fcx:B 275 233 0.2353 0.2182 0.2575 0.002 3fcx:A
11 7b6b:A 346 122 0.1529 0.1127 0.3197 0.016 7b6b:B
12 7yko:A 259 94 0.1059 0.1042 0.2872 0.18
13 6qe2:A 257 101 0.0941 0.0934 0.2376 0.48 6qe2:B
14 7pi0:Y 222 35 0.0588 0.0676 0.4286 0.64 7pi0:y, 7pi5:Y, 7pi5:y, 7pin:Y, 7pin:y, 7pin:Y1, 7pin:y1, 7piw:Y, 7piw:y, 7piw:Y1, 7piw:y1, 7pnk:Y
15 7vvc:B 263 29 0.0549 0.0532 0.4828 0.65 8jmo:A, 8jmo:B, 8jmp:A, 8qrj:A, 7vvc:A, 7vve:A, 7vve:B, 7w45:A, 7w45:B
16 6i8w:B 310 87 0.0941 0.0774 0.2759 0.81
17 6aid:A 261 51 0.0627 0.0613 0.3137 1.0 3wyn:A, 3wyn:B
18 7pi0:G 221 50 0.0667 0.0769 0.3400 1.1 7pi0:g, 7pi5:G, 7pi5:g, 7pin:G, 7pin:g, 7pin:G1, 7pin:g1, 7piw:G, 7piw:g, 7piw:G1, 7piw:g1, 7pnk:G
19 7qjt:A 267 34 0.0549 0.0524 0.4118 1.5
20 8a2c:A 268 54 0.0627 0.0597 0.2963 1.9 8a2c:B
21 5lui:A 264 29 0.0510 0.0492 0.4483 1.9 5luk:A, 5lul:A, 7xtt:B, 7xtv:A, 7xtv:B
22 8xho:A 262 65 0.0784 0.0763 0.3077 2.2 8xho:B
23 2wtn:B 250 111 0.1059 0.1080 0.2432 2.7 2wtn:A
24 3tqe:A 316 33 0.0510 0.0411 0.3939 3.4
25 3stu:B 259 91 0.0824 0.0811 0.2308 4.4 3stv:A, 3stw:A, 3stw:B, 3stx:A, 3stx:B
26 5y5r:D 253 62 0.0745 0.0751 0.3065 5.2 5y5r:A, 5y5r:B, 5y5r:C, 5y5r:E, 5y5r:F
27 2xts:D 204 89 0.0941 0.1176 0.2697 5.7 2xts:B
28 3mpb:B 227 42 0.0510 0.0573 0.3095 6.0 3kmh:A, 3kmh:B, 3mpb:A
29 7qe7:K 531 61 0.0706 0.0339 0.2951 7.7 5a31:J, 5a31:K, 5g04:J, 5g04:K, 5g05:J, 5g05:K, 9gaw:Q, 9gaw:K, 3hym:B, 3hym:D, 3hym:F, 3hym:H, 3hym:J, 3hym:L, 5lcw:J, 5lcw:K, 8pkp:Q, 8pkp:K, 6q6g:Q, 6q6g:K, 6q6h:Q, 6q6h:K, 7qe7:Q, 8s4g:Q, 8s4g:K, 6tlj:J, 6tlj:K, 6tm5:J, 6tm5:K, 6tnt:J, 6tnt:K, 4ui9:J, 4ui9:K
30 2yfn:A 719 89 0.0941 0.0334 0.2697 8.2 2yfo:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218