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BioLiP
>protein
GPCLVIQRQDMTAFFKLFDDDLIQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANTVEEDEEET
KYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERSVH

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7e34:B 142 142 1.0000 1.0000 1.0000 2.36e-105
2 3vb9:B 462 81 0.1338 0.0411 0.2346 1.3 3vb9:D
3 8jb1:A 468 72 0.1549 0.0470 0.3056 1.5 8jb1:B
4 7w1y:6 716 66 0.1338 0.0265 0.2879 3.1 7w1y:E
5 5grb:B 212 47 0.0986 0.0660 0.2979 7.1 5gq1:A, 5gq1:B, 5gq1:C, 5gq1:D, 5grb:A, 5grb:C, 5grb:D, 5grb:E, 5grb:F
6 6bjb:A 384 75 0.1408 0.0521 0.2667 8.0 6bjb:B
7 4arz:A 291 53 0.0986 0.0481 0.2642 8.5 6jwp:A, 6jwp:F, 3r7w:A, 3r7w:C
8 8p23:B 715 26 0.0704 0.0140 0.3846 9.1 8p23:A, 8p27:A, 8p27:B, 8p28:A, 8p28:B, 8p28:C, 8p28:D, 8p2c:A, 8p2c:B, 8p2c:C, 8p2c:D, 8p2d:A, 8p2d:B, 8p2s:A, 8p2s:B, 8p39:A, 8p39:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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