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BioLiP
>protein
GPASVPTTCCFNLANRKIPLQRLESYRRITSGKCPQKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2mpm:A 74 74 1.0000 1.0000 1.0000 2.28e-50
2 4r8i:A 68 65 0.6081 0.6618 0.6923 7.60e-31
3 2ra4:B 65 62 0.5541 0.6308 0.6613 6.94e-26
4 7f1t:A 423 68 0.3649 0.0638 0.3971 4.46e-13 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
5 6fgp:B 68 61 0.3243 0.3529 0.3934 3.56e-11 1b3a:B, 1b3a:A, 5coy:A, 5dnf:C, 5dnf:D, 5dnf:I, 5dnf:A, 5dnf:F, 5dnf:G, 5dnf:H, 1u4l:A, 1u4m:A
6 2hci:A 68 61 0.2432 0.2647 0.2951 3.89e-05
7 7xbx:R 349 50 0.2162 0.0458 0.3200 0.003 7xbw:R
8 1ilp:A 71 38 0.1892 0.1972 0.3684 0.008 1ilq:A, 6xmn:A
9 8hku:L15E 169 63 0.2838 0.1243 0.3333 0.46 8hkv:L15E, 8hky:L15E, 8hkz:L15E, 8hl1:L15E, 8hl2:L15E, 8hl3:L15E, 8hl4:L15E, 8hl5:L15E
10 2nwg:A 68 62 0.1757 0.1912 0.2097 1.6 2nwg:B, 4uai:A
11 7xtc:R 275 58 0.2162 0.0582 0.2759 3.1
12 4f1n:A 904 31 0.1351 0.0111 0.3226 4.1 5the:A, 5the:C, 5the:E, 5the:G
13 4f1n:B 853 31 0.1351 0.0117 0.3226 4.1
14 4v4n:AS 150 33 0.1486 0.0733 0.3333 4.6 4v6u:BS
15 7niw:A 1140 47 0.2027 0.0132 0.3191 5.2 7niu:A, 7niv:A, 6s7p:A
16 7ty0:D 485 44 0.1757 0.0268 0.2955 6.8 8ja5:A, 7txz:B, 2vwd:A, 2vwd:B, 8xc4:B
17 1ord:A 730 51 0.1757 0.0178 0.2549 8.3 1c4k:A, 1ord:B
18 4i3h:A 1037 13 0.0676 0.0048 0.3846 9.2 3foe:D, 3foe:C, 3fof:C, 3fof:D, 4i3h:B, 4juo:A, 4juo:C, 3k9f:A, 3k9f:C, 3k9f:D, 3k9f:B, 4koe:A, 4koe:C, 4koe:D, 4koe:B, 4kpe:A, 4kpe:C, 4kpe:D, 4kpe:B, 4kpf:A, 4kpf:C, 4kpf:D, 4kpf:B, 3ksa:A, 3ksa:C, 3ksa:D, 3ksa:B, 3ksb:A, 3ksb:B, 3ksb:C, 3ksb:D, 3ltn:A, 3ltn:C, 3ltn:D, 3ltn:B, 3rad:A, 3rad:C, 3rad:D, 3rad:B, 3rae:A, 3rae:C, 3rae:D, 3rae:B, 3raf:A, 3raf:C, 3raf:D, 3raf:B, 4z3o:B, 4z3o:A, 4z4q:A, 4z4q:B, 4z53:A, 4z53:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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