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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GNVYTKDIKRVARELYDKFKDQASDKYDDNKKLVDEYVNVSSKKVKNRIAGYLTRYVKISKN

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hkx:S17E 62 62 1.0000 1.0000 1.0000 6.93e-38 8hky:S17E, 8hkz:S17E, 8hl1:S17E, 8hl2:S17E, 8hl3:S17E, 8hl4:S17E, 8hl5:S17E, 8wkp:S17E, 8wq2:S17E, 8wq4:S17E
2 6skf:At 64 59 0.4677 0.4531 0.4915 5.98e-17 6skg:At, 6skg:Bm, 6th6:At
3 6tmf:T 64 59 0.4516 0.4375 0.4746 9.37e-16
4 5jb3:S 67 59 0.4516 0.4179 0.4746 2.17e-14 5jbh:S, 6sw9:S, 6swc:S, 6swe:S, 4v4n:BS, 4v6u:AS, 7zag:S, 7zah:S, 7zai:S, 7zhg:S
5 6gsm:R 111 58 0.3548 0.1982 0.3793 9.38e-10
6 8bn3:C7 92 58 0.3387 0.2283 0.3621 1.12e-09
7 5xyi:R 118 56 0.3387 0.1780 0.3750 2.14e-09
8 4v6i:AQ 136 58 0.3387 0.1544 0.3621 4.75e-09 7a1g:H, 7b7d:G, 8bqd:G, 8bqx:G, 8cah:H, 8cas:I, 8cbj:R, 8ccs:t, 8cdl:t, 8cdr:t, 8ceh:t, 8cf5:t, 8cg8:t, 8cgn:t, 8civ:t, 8cku:t, 8cmj:t, 5dat:C7, 5dat:c7, 5dc3:C7, 5dc3:c7, 5dge:C7, 5dge:c7, 5dgf:C7, 5dgf:c7, 5dgv:C7, 5dgv:c7, 6eml:C, 8eub:BR, 8evp:BR, 8evq:BR, 8evr:BR, 8evs:BR, 8evt:BR, 8ewb:BR, 8ewc:BR, 6fai:R, 5fci:C7, 5fci:c7, 5fcj:C7, 5fcj:c7, 6fyx:R, 6fyy:R, 6gq1:AH, 6gqb:AH, 6gqv:AH, 6gsn:R, 6hhq:S, 6hhq:c7, 5i4l:C7, 5i4l:c7, 6i7o:G, 6i7o:Gb, 8i7j:R, 5it7:R, 5it9:R, 3j6x:17, 3j6y:17, 3j77:17, 3j78:17, 3j80:R, 3j81:R, 3jam:R, 3jap:R, 5juo:OB, 5jup:OB, 5jus:OB, 5jut:OB, 5juu:OB, 8k2d:SR, 8k82:SR, 5lyb:C7, 5lyb:c7, 5m1j:R2, 5mc6:G, 5mei:c7, 5mei:S, 7mpi:BR, 7mpj:BR, 7n8b:BR, 5ndg:C7, 5ndg:c7, 5ndv:C7, 5ndv:c7, 5ndw:C7, 5ndw:c7, 7nrc:SG, 7nrd:SG, 5obm:C7, 5obm:c7, 5on6:c7, 5on6:S, 7osa:eS17, 7osm:eS17, 6q8y:G, 6rbd:R, 6rbe:R, 7rr5:SR, 8rw1:R, 6s47:BS, 8s8d:R, 8s8e:R, 8s8f:R, 8s8g:R, 8s8h:R, 8s8i:R, 8s8j:R, 6snt:R, 6sv4:G, 6sv4:Gb, 6sv4:Gc, 6t4q:SR, 6t7i:SR, 6t7t:SR, 6t83:Rb, 6t83:s, 5tbw:S, 5tbw:c7, 6tb3:G, 5tga:C7, 5tga:c7, 5tgm:C7, 5tgm:c7, 6tnu:G, 4u3m:C7, 4u3m:c7, 4u3n:C7, 4u3n:c7, 4u3u:C7, 4u3u:c7, 4u4n:C7, 4u4n:c7, 4u4o:C7, 4u4o:c7, 4u4q:C7, 4u4q:c7, 4u4r:C7, 4u4r:c7, 4u4u:C7, 4u4u:c7, 4u4y:C7, 4u4y:c7, 4u4z:C7, 4u4z:c7, 4u50:C7, 4u50:c7, 4u51:C7, 4u51:c7, 4u52:C7, 4u52:c7, 4u53:C7, 4u53:c7, 4u55:C7, 4u55:c7, 4u56:C7, 4u56:c7, 4u6f:C7, 4u6f:c7, 4uer:V, 6uz7:R, 4v88:AR, 4v88:CR, 4v8y:AR, 4v8z:AR, 4v92:BR, 6wdr:R, 6woo:RR, 6xiq:AH, 6xir:AH, 6y7c:R, 6z6j:SR, 6z6k:SR, 6zce:S, 7zpq:AR, 7zrs:AR, 6zu9:I, 7zuw:AR, 7zux:DR, 6zvi:z, 7zw0:sG
9 4d5l:R 109 58 0.3387 0.1927 0.3621 9.39e-09 4d61:R, 4ujc:CR, 4ujd:CR, 4uje:BR
10 5xxu:R 117 58 0.3226 0.1709 0.3448 9.69e-09
11 8oeq:DE 125 58 0.3387 0.1680 0.3621 1.18e-08 8c3a:T, 8c3a:DE, 8cq7:T, 8cq7:DE, 8cqw:T, 8cqw:DE, 8cre:T, 8cre:DE, 8oeq:T, 7pzy:S, 7q08:S, 7q0f:S, 7q0p:S, 7q0r:S, 8q5i:S
12 4v5o:AV 121 58 0.3387 0.1736 0.3621 1.21e-08 4bts:AV, 4bts:BV, 4bts:CV, 4bts:DV, 4v5o:BV
13 8ifd:2y 135 58 0.3387 0.1556 0.3621 1.39e-08 7a01:C3, 7a09:w, 5a2q:R, 5aj0:BR, 9bdl:AS17, 9bdn:AS17, 9bdp:AS17, 8bhf:S3, 9bkd:M, 9bln:M, 8btk:Aq, 7cpu:SR, 7cpv:SR, 6d90:SS, 6d9j:SS, 9f1b:Aq, 9f1c:Aq, 9f1d:Aq, 6fec:e, 5flx:R, 6g18:R, 6g4s:R, 6g4w:R, 6g51:R, 6g53:R, 6g5h:R, 6g5i:R, 8g5y:SR, 8g5z:SR, 8g60:SR, 8g61:SR, 8g6j:SR, 8glp:SR, 6gz3:BR, 6gz4:BR, 6gz5:BR, 6hcf:S1, 6hcj:S2, 6hcm:S1, 6hcq:S2, 8ife:2y, 6ip5:2y, 6ip6:2y, 6ip8:2y, 3j7p:SR, 3j7r:SR, 3jag:RR, 3jah:RR, 3jai:RR, 3jaj:SR, 3jan:SR, 8jdj:AD, 8jdk:AD, 8jdl:AD, 8jdm:AD, 7jqb:S, 7jqc:S, 5k0y:e, 8k2c:SR, 7k5i:R, 4kzx:R, 4kzy:R, 4kzz:R, 5lks:SR, 7ls1:z2, 7ls2:z2, 5lzs:RR, 5lzt:RR, 5lzu:RR, 5lzv:RR, 5lzw:RR, 5lzx:RR, 5lzy:RR, 5lzz:RR, 7mdz:RR, 7mq8:NU, 7mqa:NU, 6mtb:RR, 6mtc:RR, 6mtd:RR, 6mte:RR, 7nwg:S2, 7nwh:RR, 7nwi:RR, 7o7y:Aq, 7o7z:Aq, 7o80:Aq, 7o81:Aq, 5oa3:R, 6ole:SR, 6olf:SR, 6olg:BR, 6oli:SR, 6olz:BR, 6om0:SR, 6om7:SR, 7oya:R2, 7oyb:R2, 7oyc:R2, 7oyd:RR, 8oz0:v, 8p03:T, 8p09:T, 8p2k:Aq, 6p4g:S, 6p4h:S, 6p5i:S, 6p5j:S, 6p5k:S, 6p5n:S, 8pj1:M, 8pj2:M, 8pj3:M, 8pj4:M, 8pj5:M, 8pj6:M, 8ppk:R, 8ppl:AR, 8q7z:Aq, 8q87:Aq, 7qgg:SR, 8qoi:SR, 7qp6:M, 7qp7:M, 7qvp:SR, 7qvp:RR, 6qzp:SR, 7r4x:R, 6r5q:KK, 6r6g:KK, 6r6p:YY, 6r7q:KK, 8scb:RR, 6sgc:S1, 7syg:S, 7syh:S, 7syi:S, 7syj:S, 7syk:S, 7syl:S, 7sym:S, 7syn:S, 7syo:S, 7syp:S, 7syq:S, 7syr:S, 7sys:S, 7syt:S, 7syu:S, 7syv:S, 7syw:S, 7syx:S, 5t2c:Az, 8t4s:R, 7toq:AS17, 7tor:AS17, 7tql:S, 7ucj:RR, 7uck:RR, 4ug0:SR, 4v6x:AR, 5vyc:R1, 5vyc:R2, 5vyc:R3, 5vyc:R4, 5vyc:R5, 5vyc:R6, 6w2s:S, 6w2t:S, 7wtt:R, 7wtu:R, 7wtv:R, 7wtw:R, 7wtx:R, 7wtz:R, 7wu0:R, 6xa1:SR, 7xnx:SR, 7xny:SR, 8xsx:SR, 8xsy:SR, 8xsz:SR, 8xxl:SR, 8xxm:SR, 8xxn:SR, 6y0g:SR, 8y0w:SR, 8y0x:SR, 6y2l:SR, 6y57:SR, 6yal:T, 6yam:T, 6yan:T, 6ybs:X, 6ybw:M, 8yoo:SR, 8yop:SR, 6z6l:SR, 6z6m:SR, 6z6n:SR, 7zjw:Sc, 7zjx:Sc, 6zlw:S, 6zm7:SR, 6zme:SR, 6zmi:SR, 6zmo:SR, 6zmt:S, 6zmw:M, 6zn5:S, 6zoj:R, 6zok:R, 6zol:R, 6zon:w, 6zp4:w, 6zuo:R, 6zv6:R, 6zvh:R, 6zvj:w, 6zvk:C3, 6zxd:R, 6zxe:R, 6zxf:R, 6zxg:R, 6zxh:R
14 3j7a:W 95 56 0.3387 0.2211 0.3750 1.53e-08 3jbn:W, 3jbo:W, 3jbp:W, 6okk:W, 8tpu:SW
15 9bh5:AR 121 56 0.3065 0.1570 0.3393 6.23e-08 9cai:AR
16 6rm3:SR0 117 58 0.3710 0.1966 0.3966 1.79e-07
17 6zj3:SV 125 58 0.3065 0.1520 0.3276 2.93e-07
18 8auv:D 119 58 0.2903 0.1513 0.3103 3.16e-07 8b2l:D1, 7qiy:I, 7qiz:AA
19 7olc:SR 128 56 0.3226 0.1562 0.3571 3.84e-07 7old:SR, 8oo0:SR, 7r81:S2, 7z3n:SR, 7z3o:SR
20 7qep:C7 117 54 0.3710 0.1966 0.4259 6.90e-07
21 4v3p:SQ 141 58 0.2742 0.1206 0.2931 9.61e-07 8ip8:qa, 8ip9:qa, 8ipa:qa, 8ipb:qa, 8jiw:BR, 8r57:h, 4v7e:BR
22 4v6w:AR 120 57 0.2742 0.1417 0.2982 2.49e-06 6xu6:AR, 6xu7:AR, 6xu8:AR
23 4v8m:AL 126 58 0.3226 0.1587 0.3448 3.98e-06 7ase:i, 5opt:k, 8ova:AL, 8ove:AL
24 6az1:V 122 58 0.3226 0.1639 0.3448 5.01e-06 8a3w:SV, 8a98:SV, 8ovj:SV, 8rxh:SV, 8rxx:SV, 5t2a:AL
25 6zu5:SR0 113 56 0.2581 0.1416 0.2857 1.91e-04
26 7pwf:R 101 57 0.3387 0.2079 0.3684 0.002 7pwo:R1
27 8bsj:SU 121 57 0.3387 0.1736 0.3684 0.002 8br8:SU, 8brm:SU, 8bsi:SU, 8btd:SU, 8btr:SU, 8fvy:R, 8g4s:R
28 8p5d:SR0 119 63 0.2258 0.1176 0.2222 0.015 8p60:SR0, 8p60:RR0, 7qca:SR0
29 3qrx:A 145 47 0.2258 0.0966 0.2979 0.18 1oqp:A
30 6rd4:X 542 36 0.2419 0.0277 0.4167 1.5 6rd4:Y, 6rd9:X, 6rd9:Y, 6rdb:Z, 6rdb:X, 6rdb:Y, 6rdc:Y, 6rdc:Z, 6rde:Y, 6rde:Z, 6rdg:X, 6rdg:Z, 6rdh:X, 6rdh:Y, 6rdi:X, 6rdi:Y, 6rdj:X, 6rdj:Y, 6rdk:X, 6rdk:Y, 6rdl:X, 6rdl:Y, 6rdm:X, 6rdm:Y, 6rdn:Z, 6rdn:X, 6rdn:Y, 6rdo:Z, 6rdo:X, 6rdo:Y, 6rdp:Z, 6rdp:X, 6rdp:Y, 6rdq:Z, 6rdq:Y, 6rdq:X, 6rdr:Z, 6rdr:Y, 6rdr:X, 6rds:Z, 6rds:Y, 6rds:X, 6rdt:X, 6rdt:Y, 6rdu:X, 6rdu:Y, 6rdv:X, 6rdv:Y, 6rdw:X, 6rdw:Y, 6rdx:X, 6rdx:Y, 6rdy:X, 6rdy:Y, 6rdz:Z, 6rdz:Y, 6re0:Z, 6re0:Y, 6re1:Z, 6re1:Y, 6re2:Y, 6re2:Z, 6re3:Y, 6re3:Z, 6re4:Y, 6re4:Z, 6re5:Y, 6re5:Z, 6re6:Y, 6re6:Z, 6re7:Y, 6re7:Z, 6re8:X, 6re8:Y, 6re8:Z, 6re9:X, 6re9:Y, 6re9:Z, 6rea:X, 6rea:Y, 6rea:Z, 6reb:X, 6reb:Z, 6rec:X, 6rec:Z, 6red:X, 6red:Z, 6ree:Y, 6ree:X, 6ree:Z, 6ref:Y, 6ref:X, 6ref:Z, 6rep:X, 6rep:Z, 6rer:Y, 6rer:X, 6rer:Z, 6res:X, 6res:Z, 6ret:X, 6ret:Z, 6reu:X, 6reu:Z
31 4g7f:A 419 38 0.1935 0.0286 0.3158 2.8
32 5o6y:A 214 26 0.1452 0.0421 0.3462 5.3 5o6y:B, 5o6y:C, 5o6y:D
33 5fgn:A 536 32 0.2097 0.0243 0.4062 5.4 4kav:A, 4kay:A, 4kay:B
34 8hl1:AEFG 725 30 0.2097 0.0179 0.4333 6.1 8hl2:AEFG, 8hl3:AEFG, 8hl4:AEFG
35 8pnh:A 386 25 0.1613 0.0259 0.4000 8.6
36 1wte:A 272 27 0.1613 0.0368 0.3704 9.4 1wte:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218