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BioLiP
>protein
GNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKWKDPDALLKHVKHMLLLTN
TFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVK
ILDTFEKLKDLFTELQKKIYV

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bxj:A 619 179 0.9890 0.2892 1.0000 4.74e-129 3bn3:A, 3bqm:B, 3bqm:C, 3bqn:B, 3bqn:C, 6bxb:A, 6bxb:B, 6bxf:A, 6bxf:B, 6ckb:A, 6ckb:B, 1cqp:A, 1cqp:B, 3e2m:A, 3e2m:B, 3eob:I, 3eob:J, 3f74:C, 3f78:A, 3f78:B, 3f78:C, 3hi6:A, 3hi6:B, 2ica:A, 4ixd:A, 7kc3:C, 7kc5:A, 7kc5:C, 7kc6:C, 7kc6:A, 1lfa:A, 1lfa:B, 3m6f:A, 1mjn:A, 1mq8:B, 1mq8:D, 1mq9:A, 2o7n:A, 1rd4:A, 1rd4:B, 1rd4:C, 1rd4:D, 1t0p:A, 3tcx:B, 3tcx:D, 3tcx:F, 3tcx:H, 3tcx:J, 3tcx:L, 3tcx:N, 3tcx:P, 3tcx:R, 3tcx:T, 3tcx:V, 3tcx:X, 3tcx:Z, 3tcx:b, 1xdd:A, 1xdd:B, 1xdg:A, 1xdg:B, 1xuo:A, 1xuo:B, 1zoo:A, 1zoo:B, 1zop:A, 1zop:B
2 5e6u:A 583 179 0.9890 0.3070 1.0000 4.88e-128 5e6r:A, 5e6s:A, 5e6s:C, 5e6s:E
3 4nen:A 1063 185 0.3812 0.0649 0.3730 1.51e-33
4 4neh:A 1084 185 0.3812 0.0637 0.3730 1.51e-33 5es4:A, 3k6s:A, 3k71:G
5 7p2d:A 751 184 0.3481 0.0839 0.3424 9.21e-32 7akk:D, 7akk:H, 1bho:1, 1bho:2, 1ido:A, 1jlm:A, 1m1u:A, 3q3g:G, 3q3g:E, 3q3g:I, 3q3g:L, 3qa3:G, 3qa3:E, 3qa3:I, 3qa3:L, 6rhw:C, 8voi:A, 4xw2:A
6 6rhv:C 170 163 0.3149 0.3353 0.3497 3.03e-28
7 4cn9:A 397 189 0.2762 0.1259 0.2646 1.73e-10 4cn9:B
8 4cn9:A 397 155 0.2376 0.1083 0.2774 2.54e-07 4cn9:B
9 1aox:A 201 170 0.2486 0.2239 0.2647 4.39e-10 1aox:B, 4bj3:B, 4bj3:A, 1dzi:A, 5hj2:C, 5hj2:A, 5hj2:B, 5hj2:D, 5hj2:E, 6nd9:C, 6nd9:F, 6nd9:I, 6nd9:L, 6nd9:O, 6nd9:R, 6ndb:C, 6ndb:F, 6ndb:I, 6ndb:L, 6ndb:O, 6ndb:R, 6ndd:C, 6ndd:F, 6ndd:I, 6ndd:L, 6ndd:O, 6ndd:R, 6ndh:C, 6ndh:L, 6ndh:O, 6ndh:R, 5thp:C, 5thp:F, 5thp:I, 5thp:L, 5thp:O, 5thp:R, 1v7p:C
10 1pt6:B 195 166 0.2431 0.2256 0.2651 3.07e-08 4a0q:A, 4a0q:B, 2b2x:A, 2b2x:B, 5hgj:A, 5hgj:B, 2m32:A, 1mhp:A, 1mhp:B, 1pt6:A, 1qc5:A, 1qc5:B, 1qcy:A
11 3ppv:A 184 146 0.1934 0.1902 0.2397 5.43e-05 3zqk:A, 3zqk:B, 3zqk:C
12 8d3d:A 1314 183 0.2155 0.0297 0.2131 7.87e-05 8d3c:A, 8d3c:B, 8d3c:C, 8d3c:D, 8d3c:E, 8d3c:F, 8d3c:G, 8d3c:H, 8d3c:I, 8d3c:J, 8d3c:K, 8d3c:L, 8d3c:M, 8d3c:N, 8d3c:O, 8d3c:P, 8d3d:B, 8d3d:C, 8d3d:D, 8d3d:E, 8d3d:F, 8d3d:G, 8d3d:H, 8d3d:I, 8d3d:J, 8d3d:K, 8d3d:L, 8d3d:M, 8d3d:N, 8d3d:O, 8d3d:P, 7f49:A, 3hxo:A, 3hxq:A, 7wn3:A, 7wn3:B, 7wn3:E, 7wn3:G, 7wn4:E, 7wn4:G, 7wn6:A, 7wn6:B, 7wn6:E, 7wn6:G, 7wpp:E, 7wpp:G, 7wpq:A, 7wpq:B, 7wpq:E, 7wpq:G, 7wpr:A, 7wpr:B, 7wpr:E, 7wpr:F, 7wpr:G, 7wpr:H, 7wpr:I, 7wpr:J, 7wpr:K, 7wpr:L, 7wpr:M, 7wpr:N, 7wpr:O, 7wpr:P, 7wpr:Q, 7wpr:R, 7wps:A, 7wps:B, 7wps:E, 7wps:G, 7wps:I, 7wps:K, 7wps:M, 7wps:O, 7wps:Q, 7wps:S, 7wps:U, 7wps:W, 7wps:Y, 7wps:a, 7wqt:A, 7wqt:B, 7wqt:E, 7wqt:F, 7wqt:G, 7wqt:H, 7wqt:I, 7wqt:J, 7wqt:K, 7wqt:L, 7wqt:M, 7wqt:N, 7wqt:O, 7wqt:P, 7wqt:Q, 7wqt:R
13 4oku:B 241 144 0.2044 0.1535 0.2569 0.031 4okr:A, 4okr:B, 4oku:A
14 2v9k:A 467 38 0.0552 0.0214 0.2632 0.27
15 4yxb:B 172 47 0.0663 0.0698 0.2553 1.3 4yxb:A
16 6nvu:A 277 90 0.1381 0.0903 0.2778 2.5 5gs8:A, 5gwa:A, 6pq8:A, 5x5g:A
17 7d0j:B 734 34 0.0773 0.0191 0.4118 2.7 7a4p:B, 7bgi:B, 7blx:B, 8cmo:B, 7dz7:B, 7dz8:B, 8h2u:B, 6ijj:B, 6ijo:B, 6jo5:B, 6jo6:B, 6qph:B, 7r3k:B, 6rhz:B, 6sl5:B, 7wyi:B, 7wzn:B, 6yxr:B, 7zq9:B, 7zqc:B, 7zqd:B, 7zqd:B2, 6zzx:B, 6zzy:B
18 6zj3:Lc 203 39 0.0884 0.0788 0.4103 3.0
19 6xtz:A 421 84 0.1381 0.0594 0.2976 4.0
20 8ghh:A 276 30 0.0552 0.0362 0.3333 4.7 8ghi:A
21 4pw3:A 365 16 0.0552 0.0274 0.6250 4.9 5k3x:A, 5k3x:B, 4pw3:B, 4pw3:C, 4pw3:D, 4pw9:A, 5wa0:A, 5wa0:B, 5wa0:C, 5wa0:D
22 4wzw:A 505 51 0.0718 0.0257 0.2549 7.6
23 9gd1:W 849 52 0.0884 0.0188 0.3077 7.7
24 6g0l:M 855 52 0.0884 0.0187 0.3077 7.7 7nkx:W, 5o9g:W
25 7vcm:A 371 80 0.1105 0.0539 0.2500 8.2 7pvc:A, 7vcm:B
26 7tn2:W 895 52 0.0884 0.0179 0.3077 8.4 9gd2:W, 9gd3:W
27 6ftx:W 878 52 0.0884 0.0182 0.3077 8.9 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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