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BioLiP
>protein
GNVARVVVWEWLNEHSRWRPYTATVCHHIENVLKEDARGSVVLGQVDAQLVPYIIDLQSMHQFRQDTGTMRPVRRNFYDP
SSAPGKGIVWEWENDGGAWTAYDMDICITIQNAYEKQHPWLDLSSLGFCYLIYFNSMSQMNRQTRRRRRLRRRLDLAYPL
TVGS

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8r5n:A 165 164 1.0000 0.9939 1.0000 5.57e-124 8r5n:B, 8r6a:A, 8r6a:B, 8r6b:A
2 9bkr:A 74 67 0.1463 0.3243 0.3582 1.20e-08 9bks:A, 8tre:A, 7uw7:A
3 9bkr:A 74 71 0.1463 0.3243 0.3380 4.56e-06 9bks:A, 8tre:A, 7uw7:A
4 2rsf:A 110 65 0.1098 0.1636 0.2769 0.58
5 5uwa:A 185 54 0.1037 0.0919 0.3148 0.72 5uwa:B
6 4qpl:A 153 65 0.1098 0.1176 0.2769 2.3 4qpl:C, 3v3l:A, 3v3l:B
7 3he3:A 366 56 0.0976 0.0437 0.2857 2.4 3hdq:A, 3hdq:B, 3hdq:C, 3hdq:D, 3hdq:E, 3hdq:F, 3hdq:G, 3hdq:H, 3hdq:I, 3hdq:J, 3hdy:A, 3hdy:B, 3hdy:C, 3hdy:D, 3hdy:E, 3hdy:F, 3hdy:G, 3hdy:H, 3hdy:I, 3hdy:J, 3he3:B, 3he3:C, 3he3:D, 3he3:E, 3he3:F, 3he3:G, 3he3:H, 3he3:I, 3he3:J, 3mj4:A, 3mj4:B, 3mj4:C, 3mj4:D, 3mj4:E, 3mj4:F, 3mj4:G, 3mj4:H, 3mj4:I, 3mj4:J
8 8tl6:B 353 99 0.1402 0.0652 0.2323 8.0
9 8g7w:B 1059 62 0.1159 0.0179 0.3065 9.5 8g7w:A
10 7aor:z 1071 65 0.1220 0.0187 0.3077 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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