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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GNSGFYLYNTQNCVFATVQDILDKITTDPSLGLLKAFNNFPITNKIQCNGLFTPRNIETLLGGTEIGKFTVTPKSSGSMF
LVSADIIASRMEGGVVLALVREGDSKPYAISYGYSSGVPNLCSLRTRIINTGLTPTTYSLRVGGLESGVVWVNALSNGND
ILGITNTSNVSFLEVIPQ

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gjt:E 181 180 1.0000 0.9834 0.9889 3.37e-126 6gjt:A, 6gjt:B, 6gjt:C, 6gjt:D, 6gjt:F
2 8wcn:A 379 62 0.1180 0.0554 0.3387 0.12 8wcn:B
3 7uxa:D 264 59 0.1067 0.0720 0.3220 0.76 7zrz:CP1
4 8iss:D 289 59 0.1067 0.0657 0.3220 0.83 8hmy:C, 8hmz:C
5 2g02:A 404 47 0.0899 0.0396 0.3404 2.1 2g0d:A
6 4pyt:A 302 155 0.2360 0.1391 0.2710 2.1
7 1gm9:A 207 63 0.0955 0.0821 0.2698 4.2 1fxh:A, 1fxv:A, 1k7d:A, 1kec:A
8 7vqo:A 1180 42 0.0843 0.0127 0.3571 9.4 7vqo:B, 7vqo:C, 7vqo:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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