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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GNRRPIWIMGAMVNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCDCGRNCKKYENFNDFLKGLRSATTPGNSK
YQEKLVLVVFDLKTGSLYDNQANDAGKKLAKNLLQHYWNNGNNGGRAYIVLSIPDLNHYPLIKGFKDQLTKDGHPELMDK
VGHDFSGNDDIGDVGKAYKKAGITGHIWQSDGITNCLPRGLSRVNAAVANRDSANGFINKVYYWTVDKRSTTRDALDAGV
DGIMTNYPDVITDVLNEAAYKKKFRVATYDDNPWVTFK

The query sequence (length=278) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4rw3:A 279 278 0.9964 0.9928 0.9964 0.0 3rlg:A, 3rlh:A, 4rw5:A
2 2f9r:A 285 283 0.6043 0.5895 0.5936 3.02e-117 2f9r:B, 2f9r:C, 2f9r:D, 1xx1:A, 1xx1:B, 1xx1:C, 1xx1:D
3 4q6x:A 278 275 0.4712 0.4712 0.4764 9.95e-86
4 2pz0:B 243 38 0.0468 0.0535 0.3421 0.021 2pz0:A
5 4r7o:C 280 54 0.0540 0.0536 0.2778 0.33 4r7o:A, 4r7o:B, 4r7o:D, 4r7o:E, 4r7o:F, 4r7o:G
6 8p5d:SE0 260 52 0.0612 0.0654 0.3269 0.88 8p60:SE0, 8p60:RE0, 7qca:SE0
7 7ym0:A 301 69 0.0612 0.0565 0.2464 0.88 7ym0:B, 7ymr:A, 7ymr:B, 7ymr:C, 7ymr:D
8 3no3:A 238 36 0.0468 0.0546 0.3611 1.2
9 5t9c:E 263 34 0.0468 0.0494 0.3824 1.7 5t91:A, 5t9b:G
10 3l12:A 297 35 0.0504 0.0471 0.4000 1.9 3l12:B
11 5bk7:H 369 40 0.0540 0.0407 0.3750 2.7 5bk7:A, 5bk7:B, 5bk7:C, 5bk7:D, 5bk7:E, 5bk7:F, 5bk7:G, 6c8t:A, 6c8t:B, 6c8t:C, 6c92:A, 6c92:B, 6c92:C, 6c92:D, 6c9b:B, 5dj3:A, 5dj3:B, 5dj3:C, 5dj3:D
12 2oog:D 268 42 0.0540 0.0560 0.3571 5.0 2oog:A, 2oog:B, 2oog:C, 2oog:E, 2oog:F
13 3af5:A 638 60 0.0504 0.0219 0.2333 6.2 3af6:A
14 1w4x:A 533 151 0.1331 0.0694 0.2450 7.7 4c74:A, 4c77:A, 4d03:A, 4d04:A, 4ovi:A, 2ylr:A, 2yls:A, 2ylt:A, 2ylw:A, 2ylx:A, 2ylz:A, 2ym1:A, 2ym2:A
15 2vsq:A 1273 40 0.0468 0.0102 0.3250 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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