Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6fqp:A 67 61 1.0000 0.9104 1.0000 2.17e-41 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
2 4xrm:B 64 59 0.4918 0.4688 0.5085 1.26e-17 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
3 1lfu:P 82 57 0.3443 0.2561 0.3684 3.90e-10 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
4 4egc:A 539 48 0.3934 0.0445 0.5000 1.12e-07
5 1mnm:C 77 51 0.2951 0.2338 0.3529 2.65e-04 1mnm:D
6 1akh:B 78 49 0.2951 0.2308 0.3673 3.18e-04 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
7 2d5v:A 135 35 0.2623 0.1185 0.4571 0.011 2d5v:B, 8t0f:A, 8t11:A
8 2cw9:A 182 40 0.2787 0.0934 0.4250 0.10
9 5zjr:A 64 32 0.2131 0.2031 0.4062 0.34 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
10 5eea:G 63 41 0.2131 0.2063 0.3171 0.49 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
11 1le8:A 53 27 0.1803 0.2075 0.4074 1.6 1akh:A, 1yrn:A
12 3q9n:A 138 53 0.2295 0.1014 0.2642 1.9 3q9n:B, 3q9u:A, 3q9u:B
13 3lrp:A 181 27 0.1475 0.0497 0.3333 2.6
14 4n83:A 285 25 0.1311 0.0281 0.3200 2.9 4n83:B, 4n83:C, 4n83:D, 4n83:E, 4n83:F, 4n83:G, 4n83:H
15 1zq3:P 68 24 0.2131 0.1912 0.5417 3.8
16 2d5a:A 142 41 0.1803 0.0775 0.2683 3.9 2e6u:X
17 6pd2:C 616 23 0.1475 0.0146 0.3913 4.0 6pd1:A, 6pd1:B, 6pd1:D, 6pd2:A, 6pd2:B, 6pd2:D
18 1fjl:A 65 32 0.1967 0.1846 0.3750 4.2 1fjl:B, 1fjl:C
19 4rh7:A 3005 46 0.2459 0.0050 0.3261 5.6
20 7d56:C 640 19 0.1311 0.0125 0.4211 6.1 7d56:B, 7d56:A, 7d5r:A, 7d5r:B, 7d8n:A, 7d8n:B, 7dan:C, 7dan:B, 7dan:A
21 6sc2:B 3930 46 0.2459 0.0038 0.3261 6.5 6rla:A, 6rla:B, 6sc2:A
22 4v4s:AY 365 34 0.1475 0.0247 0.2647 7.1 6c5l:AY, 6c5l:CY, 4v5e:AY, 4v5e:CY, 4v5j:AY, 4v5j:CY, 4v67:AX, 4v67:CX, 4v9n:AY, 4v9n:CY
23 4j19:A 77 62 0.2459 0.1948 0.2419 7.2 4j19:B
24 5mdy:7 324 34 0.1475 0.0278 0.2647 7.3
25 5bp4:R 637 14 0.1311 0.0126 0.5714 7.3 5bp4:O, 5bp4:Q
26 5bp4:L 897 14 0.1311 0.0089 0.5714 7.4 5bp4:I
27 5bp4:A 1102 14 0.1311 0.0073 0.5714 7.4 5bp2:A, 5bp4:B, 5bp4:C, 5bp4:D, 5bp4:E, 5bp4:F, 5bp4:G, 5bp4:H, 5bp4:J, 5bp4:K, 5bp4:M, 5bp4:N, 5bp4:P
28 7c9m:C 260 42 0.2459 0.0577 0.3571 7.9 7c7m:A, 7c9m:A, 7c9m:B, 7c9m:D
29 8rev:A 709 52 0.2459 0.0212 0.2885 8.9

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218