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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GNKEKADQQKAVTDIVALENALDMYKLDNSVYPTTDQGLEALVTKPTNPEPRNYREGGYIKRLPKDPWGNDYQYLSPGDK
GTIDVFTLGADGQEGGEGTGADIGNWNIQDFQLEHHHHH

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4lw9:A 119 119 1.0000 1.0000 1.0000 1.89e-86 3fu1:A, 3fu1:B, 3gn9:A, 3gn9:B, 3gn9:C, 4lw9:B, 4lw9:C, 4lw9:D, 4lw9:E, 4lw9:F, 4lw9:I, 4lw9:J, 4lw9:K, 4lw9:L, 4lw9:Q, 4lw9:R
2 5o2y:A 116 109 0.6050 0.6207 0.6606 1.69e-46
3 5wda:A 130 93 0.5546 0.5077 0.7097 1.10e-44 5wda:B, 5wda:C, 5wda:D, 5wda:E, 5wda:F, 5wda:G, 5wda:H, 5wda:I, 5wda:J, 5wda:K, 5wda:L, 5wda:M, 5wda:N, 5wda:O, 5wda:P, 5wda:Q, 5wda:R, 5wda:S, 5wda:T, 5wda:U, 5wda:V, 5wda:W, 5wda:X, 5wda:Y
4 3g20:B 119 113 0.5798 0.5798 0.6106 1.84e-44 3g20:A
5 7q2x:D 994 26 0.0924 0.0111 0.4231 2.2 7q2y:D
6 7qen:D 1050 26 0.0924 0.0105 0.4231 2.2
7 1c9q:A 117 72 0.1597 0.1624 0.2639 2.2 8aza:C, 1i3o:E, 1i3o:F, 4j3y:A, 4j3y:C, 4j44:A, 4j44:C, 4j45:A, 4j45:C, 4j46:A, 4j46:C, 4j47:A, 4j47:C, 4j48:A, 4j48:C, 4kju:A, 4kju:C, 4kjv:A, 4kjv:C, 4wvs:A, 4wvt:A, 4wvt:B, 4wvu:A
8 7qgj:A 79 46 0.0840 0.1266 0.2174 2.4 7qgj:B
9 2wag:A 217 48 0.1176 0.0645 0.2917 3.2
10 5kzt:B 510 33 0.1008 0.0235 0.3636 4.7 5kzt:A
11 8ijg:C 250 31 0.1176 0.0560 0.4516 6.0 8ij6:A, 8ij6:B, 8ij6:C, 8ij6:D, 8ijg:A, 8ijg:B, 8ijg:D
12 4oko:A 290 44 0.1345 0.0552 0.3636 10.0 4oko:B, 4oko:C, 4oko:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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