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BioLiP
>protein
GNILQKIENILKKIENILWKIENILQKIEG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pnd:A 30 30 1.0000 1.0000 1.0000 7.18e-13 4pnd:C
2 4pn8:H 30 25 0.6333 0.6333 0.7600 0.002 4pn8:J
3 4pn8:H 30 24 0.6333 0.6333 0.7917 0.002 4pn8:J
4 4pnb:D 30 30 0.4667 0.4667 0.4667 0.017
5 7bat:B 30 30 0.4667 0.4667 0.4667 0.11 7baw:D, 7baw:F
6 6g68:H 30 30 0.3333 0.3333 0.3333 0.36 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
7 6gg3:E 481 12 0.3333 0.0208 0.8333 1.7 3h6o:C, 8hmu:B, 6nu1:A
8 5uxt:A 33 24 0.2667 0.2424 0.3333 3.3 5uxt:C
9 2dq0:A 447 26 0.3000 0.0201 0.3462 4.1 2dq0:B, 2zr2:A, 2zr2:B
10 1zak:A 220 25 0.3000 0.0409 0.3600 8.1 1zak:B
11 4xxk:A 149 17 0.2667 0.0537 0.4706 8.7 4xxi:A, 4xxi:B, 4xxk:B
12 2i74:A 180 15 0.2667 0.0444 0.5333 9.8 2i74:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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