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BioLiP
>protein
GNGEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVA
GLRLD

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4qpl:A 153 84 0.9882 0.5490 1.0000 3.64e-59 4qpl:C, 3v3l:A, 3v3l:B
2 2rsf:A 110 81 0.9412 0.7273 0.9877 2.17e-56
3 5vzt:B 418 39 0.1529 0.0311 0.3333 1.3 5vzt:D, 5vzu:B, 5vzu:D
4 1yiq:A 684 52 0.2000 0.0249 0.3269 2.8
5 8tc0:B 1091 21 0.1059 0.0082 0.4286 3.1 8tc0:A, 8tc0:C, 8tc1:C, 8tc1:A, 8tc1:B, 8tc5:C, 8tc5:A, 8tc5:B, 1zv8:A, 1zv8:C, 1zv8:E, 5zvm:A, 5zvm:B
6 8h10:A 1026 21 0.1059 0.0088 0.4286 4.2 8h0y:B, 8h0z:A, 8h10:B, 8h10:C, 7zh1:A, 7zh1:B, 7zh1:C, 7zh2:A, 7zh2:B, 7zh2:C
7 8h0z:B 1045 21 0.1059 0.0086 0.4286 4.2 8h0x:A, 8h0x:B, 8h0x:C, 8h0y:A, 8h0y:C, 8h0z:C, 8h14:B, 8h14:C, 8h14:A
8 3j7a:N 98 45 0.1412 0.1224 0.2667 4.3 3jbn:N, 3jbo:N, 3jbp:N, 6okk:N, 8tpu:SN
9 5umw:B 134 38 0.1647 0.1045 0.3684 7.0 5umw:E, 5umw:A
10 8r5n:A 165 54 0.1647 0.0848 0.2593 7.9 8r5n:B, 8r6a:A, 8r6a:B, 8r6b:A
11 5ups:A 520 46 0.1529 0.0250 0.2826 9.2 5upq:A, 5upq:B, 5ups:B, 5upt:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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