Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMVVFIDPGHNGANDASIGRQVPTGRGGTKNCQASGTSTNSGYPEHTFTWETGLRLRAALNALGVRTALSRGNDNALGPC
VDERANMANALRPNAIVSLHADGGPASGRGFHVNYSAPPLNAIQAGPSVQFARIMRDQLQASGIPKANYIGQDGLYGRSD
LAGLNLAQYPSILVELGNMKNPADSALMESAEGRQKYANALVRGVAGFLATQG

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4m6g:A 214 212 0.9953 0.9907 1.0000 1.42e-156 4lq6:A, 4m6i:A, 4m6i:B
2 7agm:A 218 212 0.7981 0.7798 0.8019 2.02e-129 7agm:B
3 7ago:A 214 210 0.6432 0.6402 0.6524 2.14e-105 7agl:A
4 5j72:A 638 196 0.2441 0.0815 0.2653 3.61e-10 5j72:B
5 8c0j:A 200 220 0.2911 0.3100 0.2818 1.69e-07 8c0j:C
6 7tj4:B 176 213 0.2207 0.2670 0.2207 1.17e-05 7tj4:D
7 5emi:A 180 211 0.2535 0.3000 0.2559 2.44e-05
8 4rn7:A 186 214 0.2254 0.2581 0.2243 2.73e-05
9 8c2o:A 228 241 0.2441 0.2281 0.2158 3.57e-05 8c2o:B
10 4bin:A 348 236 0.2254 0.1379 0.2034 0.001
11 1jwq:A 179 208 0.2207 0.2626 0.2260 0.008
12 7rag:B 197 171 0.1643 0.1777 0.2047 0.011
13 3ne8:A 226 81 0.1033 0.0973 0.2716 0.28
14 5ikb:A 249 33 0.0657 0.0562 0.4242 1.5
15 3be7:A 398 49 0.0798 0.0427 0.3469 4.4 3be7:E, 3be7:B, 3be7:D, 3be7:C, 3be7:F, 3be7:G, 3be7:H, 3dug:A, 3dug:B, 3dug:C, 3dug:D, 3dug:E, 3dug:F, 3dug:G, 3dug:H

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218