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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GMVRIAVAGAAGRMGRNLVKAAHHNPVAKVAAGSERPESSLVGVDLGELCGEGKFDVVVCDDLAKQIDQFDVIIDFTAPA
STLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVVMAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHK
VDAPSGTAIGMGEAIAGAMGNKLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTF
ANGAVKAAVWLHEKPAGFYTMTDVLGLN

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5tej:A 269 267 0.9963 0.9926 1.0000 0.0 5tej:B, 5tej:C, 5tej:D, 5tem:C, 5tem:A, 5ten:A, 5ten:B, 5ten:C, 5ten:D, 5ten:E, 5ten:F, 5ten:G, 5ten:H, 5us6:A, 5us6:B, 5us6:C, 5us6:E, 5us6:F, 5us6:G, 5us6:I, 5us6:J, 5us6:K
2 1dih:A 272 266 0.6231 0.6140 0.6278 3.56e-113 1arz:A, 1arz:B, 1arz:C, 1arz:D, 1dru:A, 1drv:A, 1drw:A
3 4ywj:A 268 268 0.5709 0.5709 0.5709 1.36e-107 4ywj:B
4 3ijp:B 267 266 0.4030 0.4045 0.4060 9.91e-61 3ijp:A
5 1vm6:B 218 263 0.3060 0.3761 0.3118 6.92e-41 1vm6:A, 1vm6:C, 1vm6:D
6 5z2e:A 265 275 0.2910 0.2943 0.2836 1.41e-27 5z2f:A
7 5eer:A 247 272 0.2985 0.3239 0.2941 6.18e-26 5ees:A
8 5wol:A 230 225 0.2873 0.3348 0.3422 5.09e-25
9 1yl5:A 247 260 0.3022 0.3279 0.3115 5.98e-25 1c3v:A, 1c3v:B, 1p9l:A, 1p9l:B, 5tjy:A, 5tjz:A, 5ugv:A, 5ugv:B, 1yl5:B, 1yl6:A, 1yl6:B, 1yl7:A, 1yl7:B, 1yl7:C, 1yl7:D, 1yl7:E, 1yl7:F, 1yl7:G, 1yl7:H
10 5u5n:A 279 213 0.2052 0.1971 0.2582 0.004 5u5i:A, 5u5i:B, 5u5n:B
11 4cqm:F 241 75 0.0896 0.0996 0.3200 0.73 4cqm:B, 4cqm:C, 4cqm:G, 4cqm:J, 4cqm:K, 4cqm:N, 4cqm:O
12 4jbg:A 333 84 0.0896 0.0721 0.2857 1.2 4jbg:B, 4jbg:C, 4jbg:D, 4jbh:A, 4jbh:B, 4jbh:C, 4jbh:D, 4jbi:A, 4jbi:B, 4jbi:C, 4jbi:D, 4jbi:E, 4jbi:F, 4jbi:G, 4jbi:H, 4jbi:I, 4jbi:J, 4jbi:K, 4jbi:L, 4jbi:M, 4jbi:N, 4jbi:O, 4jbi:P
13 1wvg:A 352 52 0.0560 0.0426 0.2885 1.3 1wvg:B
14 7o2z:L 219 38 0.0299 0.0365 0.2105 2.3 7m51:L, 7m52:L, 7m53:L, 7m55:L
15 4oht:A 455 117 0.0970 0.0571 0.2222 5.4 4oht:B, 4ywu:A, 4ywu:B, 4ywv:A, 4ywv:B
16 8v4h:B 342 80 0.0896 0.0702 0.3000 5.9 8v4g:A, 8v4g:B, 8v4h:A
17 2fmy:A 218 65 0.0858 0.1055 0.3538 9.0 2fmy:B, 2fmy:C, 2fmy:D, 2hkx:A, 2hkx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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