Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GMSTQYWEEEIEIMSREKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIRKIPFTTKSDMRANYPFGLV
AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV
PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGM
TEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREMMPLIRYRTRDLTRILPGKCPCGRTH
LRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLDNYIELEKIRRDIIRQLK
DEILVTPKVKLVKKGSLPQSEGKAVRVKDLR

The query sequence (length=431) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4r1m:A 435 433 1.0000 0.9908 0.9954 0.0 4r1l:A, 4r1l:B, 4r1l:C, 4r1l:D, 4r1m:B, 4r1m:C, 4r1m:D, 4rvn:A, 4rvn:B, 4rvn:C, 4rvn:D, 4rvo:A, 4rvo:B, 4rvo:C, 4rvo:D
2 2y4o:A 433 430 0.4408 0.4388 0.4419 8.06e-125 2y4o:B
3 2y27:B 427 427 0.4223 0.4262 0.4262 4.42e-119 2y27:A, 2y4n:A, 2y4n:B
4 6he0:A 477 445 0.3364 0.3040 0.3258 6.87e-64 6hdw:A, 6hdx:A, 6hdy:A, 6he2:A, 6he2:B
5 6six:B 437 349 0.2274 0.2243 0.2808 3.50e-30 6siw:A, 6siw:B, 6six:A, 6siy:A, 6siy:B, 6siz:A, 6siz:B, 6tm4:AAA, 6tm4:BBB, 6wuq:A, 6wuq:B
6 4wv3:B 518 296 0.1810 0.1506 0.2635 8.70e-10 4wv3:A
7 7kdn:A 622 394 0.1972 0.1367 0.2157 3.05e-06 7kdn:B, 7kdn:C, 7kdn:D, 7kdn:E, 7kdn:F
8 4rlf:B 519 281 0.1671 0.1387 0.2562 4.13e-06 6m2t:A, 6m2t:B, 6m2t:C, 6m2t:D, 6m2u:A, 6m2u:B, 4rlf:A, 4rlq:A, 4rlq:B, 4rm2:A, 4rm2:B, 4rm3:A, 4rm3:B, 4rmn:A, 4rmn:B, 4zjz:A, 4zjz:B
9 8w0b:A 667 359 0.1833 0.1184 0.2201 4.55e-05 7kds:A, 8v4o:A, 8v4o:B, 8v4o:C, 8v4p:A, 8v4p:B, 8v4p:C, 8v4r:A, 8v4r:B, 8v4r:C, 8w0b:B, 8w0b:C, 8w0c:A, 8w0c:B, 8w0c:C, 8w0d:A, 8w0d:B, 8w0d:C, 8w0h:A, 8w0h:B, 8w0h:C, 8w0j:A, 8w0j:B, 8w0j:C, 8w0l:A, 8w0l:B, 8w0l:C, 8w0m:A, 8w0m:B, 8w0m:C
10 3pbk:A 555 108 0.0766 0.0595 0.3056 5.77e-05 3pbk:B
11 8wev:A 486 170 0.1206 0.1070 0.3059 1.98e-04 8wev:B
12 7l4g:B 668 294 0.1810 0.1168 0.2653 2.06e-04 9c8s:A, 9c8s:B, 9c8s:C, 8eps:A, 8eps:B, 8eps:C, 8g0r:A, 8g0r:B, 8g0r:C, 8g0s:A, 8g0s:B, 8g0s:C, 8g0t:A, 8g0t:B, 8g0t:C, 8g0u:A, 8g0u:B, 8g0v:A, 8g0v:B, 8g0v:C, 5ifi:A, 5ifi:B, 5ifi:C, 5k85:A, 5k85:B, 5k85:C, 5k8f:A, 5k8f:B, 5k8f:C, 7kno:A, 7kno:B, 7kno:C, 7knp:A, 7knp:B, 7knp:C, 7l4g:A, 7l4g:C, 5u29:A, 5u29:B, 5u29:C, 8v5g:A, 8v5g:B
13 7kvy:A 633 385 0.1879 0.1280 0.2104 0.001 7kcp:A, 7kq6:A, 7kq6:B, 7kq6:C, 7kqz:A, 7l3p:A, 7l3q:A, 7l3q:B, 7l3q:C
14 6e97:B 537 321 0.1647 0.1322 0.2212 0.001 6e8o:A, 6e8o:B, 6e97:A
15 8rwj:D 676 131 0.0882 0.0562 0.2901 0.010 8rwj:I, 8rwj:A, 8rwj:B, 8rwj:C, 8rwj:E, 8rwj:F, 8rwj:G, 8rwj:H, 1ry2:A
16 7thq:B 505 337 0.1856 0.1584 0.2374 0.015 6o6e:B, 7thq:A
17 7a9j:A 503 173 0.0905 0.0775 0.2254 0.064 7a9i:A
18 1wsv:A 371 174 0.0974 0.1132 0.2414 0.076 1wsv:B
19 5ja2:A 1238 317 0.1601 0.0557 0.2177 0.18 5ja1:A, 5t3d:A
20 5wm3:A 537 283 0.1555 0.1248 0.2367 0.19 5wm2:A, 5wm4:A, 5wm5:A, 5wm6:A, 5wm7:A
21 8biq:A 562 281 0.1276 0.0979 0.1957 0.22 8biq:B, 8biq:C, 8biq:D, 8bit:A, 8bit:B
22 4gxq:A 506 190 0.1021 0.0870 0.2316 0.25 4fut:A, 4gxq:B, 4gxq:C, 4gxr:A
23 4ir7:A 508 24 0.0325 0.0276 0.5833 0.51
24 3e7w:A 508 207 0.1044 0.0886 0.2174 0.53 3e7x:A
25 3rg2:C 613 349 0.1694 0.1191 0.2092 0.71 6iyk:A, 6iyk:B, 6iyl:A, 6iyl:B, 4iz6:A, 4iz6:B, 8k5s:A, 8k5s:B, 8k5t:A, 8k5t:B, 3rg2:A, 3rg2:B, 3rg2:H, 3rg2:D, 3rg2:E, 3rg2:F, 3rg2:I, 3rg2:G, 3rg2:J
26 8rpl:B 630 305 0.1647 0.1127 0.2328 1.2 8rpk:A, 8rpk:B, 8rpk:C, 8rpk:D, 8rpl:A, 8rpl:C, 8rpl:D
27 3r44:A 502 39 0.0302 0.0259 0.3333 2.1 5zrn:A, 5zrn:B
28 8et7:A 532 28 0.0302 0.0244 0.4643 2.2 8et8:A
29 5bsm:A 530 276 0.1392 0.1132 0.2174 2.4 5bsm:B, 5bsr:A, 5bst:A, 5bsu:A, 5bsv:A, 5bsw:A, 5bsw:B, 5u95:D, 5u95:B, 5u95:C
30 2d1r:A 539 178 0.1021 0.0816 0.2472 2.5 2d1q:A, 2d1s:A, 2d1t:A
31 8u2r:A 664 103 0.0626 0.0407 0.2621 3.0 8sf3:A, 8u2s:A, 8u2s:B, 8u2t:A, 8u2u:A
32 3a9v:A 528 113 0.0650 0.0530 0.2478 3.0 3ni2:A
33 7tmm:A 593 95 0.0580 0.0422 0.2632 3.1 7tmo:A, 7tmo:E, 7tmp:A, 7tmq:A, 7tmr:E, 7tms:E, 7tmt:E
34 4v8l:D 2822 44 0.0464 0.0071 0.4545 3.5 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
35 8yyr:A 496 256 0.1369 0.1190 0.2305 3.6 7dq5:A, 7dq5:B, 7dq6:A, 7dq6:B, 6m01:A, 8yyq:A
36 3kxw:A 572 329 0.1601 0.1206 0.2097 3.7 3lnv:A
37 4dpv:Z 559 108 0.0626 0.0483 0.2500 4.0 1c8d:A, 1c8f:A, 1c8g:A, 1ijs:P, 1p5w:A, 4qyk:K, 4qyk:V, 4qyk:E, 4qyk:J, 4qyk:S, 4qyk:B, 4qyk:c, 4qyk:W, 4qyk:H, 4qyk:I, 4qyk:T, 4qyk:L, 4qyk:M, 4qyk:C, 4qyk:R, 4qyk:A, 4qyk:b, 4qyk:Y, 4qyk:d, 4qyk:F
38 3fcc:A 500 115 0.0835 0.0720 0.3130 4.3 3dhv:A, 3fce:A
39 3u16:B 437 151 0.0812 0.0801 0.2318 5.5 3o82:A, 3o82:B, 3o83:A, 3o83:B, 3o84:A, 3o84:B, 3u16:A, 3u17:A, 3u17:B
40 8cdb:A 306 88 0.0557 0.0784 0.2727 6.2 8cd8:A, 8cd8:C, 8cdb:B, 8cdb:C, 8cdb:D, 8cdb:E, 8cdb:F, 8cdb:G, 8cdb:H, 8cdb:I, 8cdb:J, 8cdb:K, 8cdb:L, 8cdb:M, 8cdb:N, 2cki:A, 2cki:B, 2j83:A, 2j83:B, 3lum:A, 3lum:B, 3lum:C, 3lum:D, 3lun:A, 3lun:B
41 5ch8:A 270 53 0.0348 0.0556 0.2830 6.7
42 8djk:B 281 80 0.0580 0.0890 0.3125 7.3 8djm:B
43 5x8f:B 485 29 0.0255 0.0227 0.3793 7.3 5buq:B, 5bur:A, 5bur:B, 5bus:A, 5bus:B, 5gtd:A, 5gtd:B, 5x8f:A, 5x8f:C, 5x8f:D, 5x8g:A, 5x8g:B, 5x8g:D, 5x8g:C
44 6ija:A 415 106 0.0603 0.0627 0.2453 8.5 6ij9:A, 6ij9:B, 6ij9:C, 6ija:B, 6ijd:A, 6ijd:B
45 5zr2:C 198 44 0.0278 0.0606 0.2727 9.7 6m1x:C, 6m1x:D, 5zr2:A, 5zr2:B, 5zr2:D

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218