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BioLiP
>protein
GMSLANQIDQFLGTIMQFAENKHEILLGKCESDVKLTSTQAHILMLLAEQISTNAKIAEKLKISPAAVTKALKKLQEQEL
IKSSRATNDERVVLWSLTEKAVPVAKEHATHHEKTLSTYQELGNKFTDEEQEVISKFLSALTEEFQ

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yhx:N 146 146 0.9932 0.9932 0.9932 2.55e-103 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
2 6fi9:A 144 144 0.8493 0.8611 0.8611 1.10e-89 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
3 3tgn:B 146 143 0.4726 0.4726 0.4825 7.08e-39 3tgn:A
4 5jlu:A 137 144 0.4315 0.4599 0.4375 4.27e-35 5jls:A
5 4xrf:A 142 85 0.1781 0.1831 0.3059 3.84e-06
6 1z9c:C 138 109 0.2534 0.2681 0.3394 7.34e-06 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
7 7el3:A 138 113 0.2192 0.2319 0.2832 1.26e-05 7el3:B
8 4kdp:A 151 122 0.2055 0.1987 0.2459 7.12e-05 4ejv:A, 4ejv:B, 4ejw:A, 4ejw:B, 4kdp:B, 4kdp:C, 4kdp:D, 3kp2:A, 3kp2:B, 3kp3:B, 3kp4:A, 3kp4:B, 3kp5:A, 3kp5:B
9 6jbx:A 146 91 0.1575 0.1575 0.2527 0.002 6jbx:B
10 6c2s:A 142 93 0.1918 0.1972 0.3011 0.040 6c28:A, 6c28:D, 6c28:B, 6c28:C, 6c2s:D, 6c2s:B, 6c2s:C
11 3hru:A 211 35 0.1164 0.0806 0.4857 0.048 3hru:B
12 8pw0:A 137 51 0.1438 0.1533 0.4118 0.077
13 3ech:B 135 111 0.1781 0.1926 0.2342 0.12 3ech:A
14 5hli:A 146 59 0.1164 0.1164 0.2881 0.27 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
15 2xkb:C 389 40 0.1301 0.0488 0.4750 0.44 2xkb:L
16 5t96:B 330 73 0.1438 0.0636 0.2877 0.83 5t96:A, 5t96:C, 5t96:D, 5t96:E, 5t96:F
17 7l1i:A 169 70 0.1370 0.1183 0.2857 0.94
18 9c4d:E 140 40 0.1027 0.1071 0.3750 0.99 9c4c:E, 9c4c:F, 9c4c:G, 9c4c:H, 9c4d:F, 9c4d:G, 9c4d:I, 9c4d:D, 9c4d:H, 9c4d:J, 9c4d:C, 2ev0:A, 2ev0:B, 2ev5:A, 2ev5:B, 2ev6:A, 2ev6:B, 2f5c:A, 2f5d:A, 2f5d:B, 2f5e:A, 2f5e:B, 2f5f:A, 2f5f:B, 4hv5:A, 4hv5:B, 4hv6:A, 4hv6:B, 4hx4:A, 4hx4:B, 1on1:A, 1on1:B, 1on2:A, 1on2:B, 3r60:A, 3r60:B, 3r61:A, 3r61:B
19 3lgd:A 482 57 0.0959 0.0290 0.2456 1.4 3lgd:B, 3lgg:A, 3lgg:B
20 3q5f:A 141 89 0.1575 0.1631 0.2584 1.5 3q5f:B
21 4aij:B 142 86 0.1438 0.1479 0.2442 2.2 4aij:A, 4aik:A
22 3j4s:A 414 23 0.1027 0.0362 0.6522 2.3 3m89:A, 2xka:A, 2xka:B, 2xka:C, 2xka:D, 2xka:E, 2xka:F, 2xka:G, 2xkb:A, 2xkb:B, 2xkb:D, 2xkb:E, 2xkb:F, 2xkb:G, 2xkb:I, 2xkb:J, 2xkb:K
23 6o5c:A 215 34 0.0890 0.0605 0.3824 2.5 6o5c:B
24 3zpl:E 160 119 0.1575 0.1437 0.1933 2.8 3zpl:A, 3zpl:B, 3zpl:F
25 7ase:a 70 33 0.0959 0.2000 0.4242 2.8 5opt:a
26 5cvi:B 215 33 0.1027 0.0698 0.4545 3.2 5cvi:A
27 2p5v:G 158 48 0.0959 0.0886 0.2917 3.3 2p5v:A, 2p5v:B, 2p5v:C, 2p5v:E, 2p5v:D, 2p5v:F, 2p5v:H, 2p6s:A, 2p6s:G, 2p6s:B, 2p6s:D, 2p6s:C, 2p6s:F, 2p6s:E, 2p6s:H, 2p6t:A, 2p6t:G, 2p6t:B, 2p6t:D, 2p6t:C, 2p6t:F, 2p6t:E, 2p6t:H
28 6ktb:B 138 44 0.0959 0.1014 0.3182 3.3
29 3gfi:A 143 84 0.1712 0.1748 0.2976 3.7 3gez:A, 3gfj:A, 3gfl:A, 3gfm:A, 2yr2:B
30 7r81:a2 71 60 0.1233 0.2535 0.3000 3.7 7olc:SZ, 7old:SZ, 8oo0:SZ, 7z3n:SZ, 7z3o:SZ
31 8iyk:L 232 30 0.0890 0.0560 0.4333 5.2 8iyk:N, 8iyk:f, 8iyl:L, 8iyl:G, 8iyl:d, 8k35:J, 8k35:G, 8k35:N, 8xcg:L, 8xcg:N, 8xcg:f
32 1elr:A 128 35 0.0753 0.0859 0.3143 6.1 3esk:A, 3fwv:A, 3fwv:B
33 5ffj:B 1232 42 0.0959 0.0114 0.3333 6.2
34 2x4h:C 131 27 0.0753 0.0840 0.4074 6.5 2x4h:A, 2x4h:B, 2x4h:D
35 5ffj:A 1044 42 0.0959 0.0134 0.3333 7.1
36 6c0f:D 190 47 0.1096 0.0842 0.3404 8.4 6cb1:D, 8e5t:D, 6em1:3, 6em3:3, 6em4:3, 6em5:3, 7ohs:3, 7ohw:3, 7ohx:3, 8v83:R, 8v84:R, 5z3g:Z
37 5eqn:A 270 38 0.0685 0.0370 0.2632 9.2 5eqn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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