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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMSHIQRETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFM
PLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNG
LVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEF
SPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF

The query sequence (length=272) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4gki:A 272 272 1.0000 1.0000 1.0000 0.0 4ej7:A, 4ej7:B, 4ej7:C, 4feu:A, 4feu:B, 4feu:C, 4feu:D, 4feu:E, 4feu:F, 4fev:A, 4fev:B, 4fev:C, 4fev:D, 4fev:E, 4fev:F, 4few:A, 4few:B, 4few:C, 4few:D, 4few:E, 4few:F, 4fex:A, 4fex:B, 4fex:C, 4fex:D, 4fex:E, 4gkh:A, 4gkh:B, 4gkh:C, 4gkh:D, 4gkh:E, 4gkh:F, 4gkh:G, 4gkh:H, 4gkh:I, 4gkh:J, 4gkh:K, 4gkh:L, 4gki:B, 4gki:C, 4gki:D, 4gki:E, 4gki:F, 4gki:G, 4gki:H, 4gki:I, 4gki:J, 4gki:K, 4gki:L
2 1nd4:A 255 251 0.3235 0.3451 0.3506 1.47e-47 1nd4:B
3 2b0q:A 263 277 0.3125 0.3232 0.3069 6.62e-27 2bkk:A, 2bkk:C, 1j7l:A, 1j7l:B, 1j7u:A, 1j7u:B, 1l8t:A, 3q2j:A, 3q2j:B, 3tm0:A
4 6fux:A 267 217 0.2353 0.2397 0.2949 6.35e-14
5 3ham:A 299 159 0.1507 0.1371 0.2579 3.49e-06 4dca:A, 3ham:B, 3hav:A, 3hav:B, 3hav:C, 3uzr:A
6 5iqc:A 301 157 0.1360 0.1229 0.2357 4.71e-04 5byl:A, 5byl:B, 5byl:C, 5byl:D, 6c5u:A, 6c5u:B, 6c5u:C, 6c5u:D, 6cav:A, 6cav:B, 6cav:C, 6cav:D, 6cey:A, 6cey:B, 6cey:C, 6cey:D, 6cgd:A, 6cgd:B, 6cgd:C, 6cgd:D, 6cgg:A, 6cgg:B, 6cgg:C, 6cgg:D, 6ch4:A, 6ch4:B, 6ch4:C, 6ch4:D, 5iqa:A, 5iqa:B, 5iqa:C, 5iqa:D, 5iqb:A, 5iqb:B, 5iqb:C, 5iqb:D, 5iqc:B, 5iqc:C, 5iqc:D, 5iqd:A, 5iqd:B, 5iqd:C, 5iqd:D, 5iqe:A, 5iqe:B, 5iqe:C, 5iqe:D, 5iqf:A, 5iqf:B, 5iqf:C, 5iqf:D, 5iqg:A, 5iqg:B, 5iqg:C, 5iqg:D, 5iqh:A, 5iqh:B, 5iqh:C, 5iqh:D, 5iqi:A, 5iqi:B, 5iqi:C, 5iqi:D, 4ork:A, 4ork:B, 4ork:C, 4ork:D
7 4dfb:B 301 212 0.1912 0.1728 0.2453 0.031 5c4k:A, 5c4l:A, 5c4l:B, 6cd7:B, 4dfb:A, 4dfu:A, 4dfu:B, 4dt8:A, 4dt8:B, 4dt9:A, 4dt9:B, 4dta:A, 4dta:B, 4dtb:A, 4dtb:B, 4n57:A, 4n57:B, 3sg8:A, 3sg8:B, 3sg9:A, 3sg9:B
8 5igi:A 300 133 0.1176 0.1067 0.2406 0.45 5igj:A, 5igp:A, 5igr:A, 5igs:A, 5igt:A
9 2d7d:A 621 124 0.1250 0.0548 0.2742 0.54 2nmv:A, 3v4r:B, 3v4r:A
10 4d5y:u 210 32 0.0551 0.0714 0.4688 1.5 4d67:u, 4ujc:Bu, 4ujd:Au, 4uje:Cu, 4v5z:B5
11 6s9a:A 312 142 0.1324 0.1154 0.2535 1.6
12 6g18:v 325 55 0.0699 0.0585 0.3455 2.5 6fdm:A, 6fdm:C, 6g51:v, 6hk6:A, 6hk6:B, 6hk6:I, 6hk6:C, 6hk6:D, 6hk6:E, 6hk6:F, 6hk6:G, 6hk6:H, 6hk6:J, 7vbt:A, 7vbt:B, 7wu0:v
13 7ax3:D2 582 116 0.1140 0.0533 0.2672 4.8 7ax3:B2, 7ax3:B, 7ax3:D, 7ax3:F, 7ax3:H, 7ax3:J, 7ax3:M, 7ax3:O, 7ax3:Q, 7ax3:S, 7ax3:U, 7ax3:W, 7ax3:Y, 7ax3:E2, 7ax3:G2, 7ax3:H2, 7ax3:I2, 7ax3:J2
14 6dlu:P 747 116 0.1140 0.0415 0.2672 5.2 2aka:B, 5d3q:A, 5d3q:B, 6dlu:B, 6s9a:B, 2x2e:A, 2x2e:D, 2x2f:A, 2x2f:D, 3zyc:A, 3zyc:D
15 8sxz:c 699 116 0.1140 0.0443 0.2672 5.3 8sxz:b, 8sxz:f, 8sxz:g, 8sz8:b, 8sz8:c, 8sz8:f, 8sz8:g, 8t0k:b, 8t0k:c, 8t0k:f, 8t0k:g, 8t0r:b, 8t0r:c, 8t0r:f, 8t0r:g, 8tym:c, 8tym:f, 8tym:B, 8tym:C, 8tyn:c, 8tyn:f, 8tyn:C, 8tyn:F
16 4ldz:A 196 41 0.0551 0.0765 0.3659 6.2 5iuk:C, 5iul:C, 5iul:F, 4ldz:B, 4le0:A, 4le0:B, 7ssj:B, 7ssj:E, 7ssj:F
17 5a9y:A 562 62 0.0735 0.0356 0.3226 6.3 5a9x:A
18 5jb3:P 56 38 0.0515 0.2500 0.3684 9.8 5jbh:P, 6skf:Ar, 6skg:Ar, 6sw9:P, 6swc:P, 6swe:P, 6th6:Ar, 4v4n:BP, 4v6u:AP, 7zag:P, 7zah:P, 7zai:P, 7zhg:P
19 5jxd:A 186 32 0.0551 0.0806 0.4688 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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