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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMSEPYTWKSVVTGAGGGFVPGIIFNQTEPNLIYARTDIGGAYRWNQATSSWVSISDSVGWVDWNKNGVDALATDPIDPN
KVYMATGTYTNHWDNNGQIMRSNDRGNTWQTTPLPFKVGGNMPGRSAGERLVIDPNKNNILYFGARSGNGLWKSIDSGVT
WSKVTSFPNVGTYIQNPTLDYGNDLVGLSWITFDKSTGTLGNATQTIYVGVADTASSVYRSTDGGVTWTALAGQPTGFLP
HHGELSSTGDLYITYSNGVGPYDGSKGEVWKYNKTSGAWTNISPTTGTDNWYGFGGLALDAQHPNTLMVSSLNAWWPDEV
IFRSTNGGATWSRIWDWGNYPERTYKFSMDITAAPWLDHGTTSTSLDPSPKLGWMMGDLEIDPFNSNRMMYGTGATIYGS
NNLTSWDTGGKVNISVMAKGVEETAVLGLISPPTGTSHLITALGDVSGFRHEDLSVAPTKFQTSPSWATTMSIDYAELSP
SYMVRVGSADKEKTPSMKSIGISNDGGVNWYMPNSEPSNGTKTTVGHGQVAVSASGNSILWSTSDIGVYYSKTSGNSWTA
SAGLPAGAKIASDRVNPNKYYGFYAGTFYVSVDGGATFTATGASGFPTNNVAGLQPNEAQISMKAVPGIEGDIWFAGGNT
VENKYGLWHSTNSGASFTKLTNVEEADLIGYGKAAPGQTYMSLYTVAKIDGVRGVFRSDDVGATWVRINDDAHQYAKINM
AITGDPRIYGRVYLGTNGRGTLYADPV

The query sequence (length=747) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mgj:A 747 747 1.0000 1.0000 1.0000 0.0 6mgj:B, 6mgj:C, 6mgj:D, 6mgj:E, 6mgj:F, 6mgj:G, 6mgj:H, 6mgk:A, 6mgk:B, 6mgk:C, 6mgk:D, 6mgl:A
2 6p2n:A 748 747 0.8849 0.8837 0.8849 0.0
3 2cn3:A 728 748 0.5582 0.5728 0.5575 0.0 2cn3:B
4 5fks:A 731 751 0.5797 0.5923 0.5766 0.0
5 6p2o:A 727 747 0.5743 0.5901 0.5743 0.0 6p2o:B
6 5jwz:A 724 739 0.5475 0.5649 0.5535 0.0 5jwz:B
7 6p2m:A 696 749 0.4163 0.4468 0.4152 1.32e-165
8 7kn8:B 708 749 0.3628 0.3828 0.3618 1.70e-145 7kn8:A
9 2ebs:B 771 780 0.3601 0.3489 0.3449 1.66e-114 2ebs:A
10 6p2l:A 685 764 0.3641 0.3971 0.3560 3.50e-105
11 6p2k:B 778 259 0.0870 0.0835 0.2510 0.008 6p2k:A
12 4ols:A 185 136 0.0442 0.1784 0.2426 1.1 4ols:B, 4ols:C, 4ols:D
13 5ud0:A 282 90 0.0348 0.0922 0.2889 1.7 5ud1:A, 5ud1:B
14 4hpn:A 378 63 0.0281 0.0556 0.3333 1.9 4ggb:A
15 9ceu:P 607 40 0.0228 0.0280 0.4250 2.6 9cev:P, 9cew:P, 9cex:P, 9cey:P, 9cez:P, 8gkh:P
16 2ydp:A 361 166 0.0562 0.1163 0.2530 2.7 5m1z:A, 2w5o:A, 2ydp:B, 2ydp:C, 2ydt:A
17 8i9p:CA 260 41 0.0228 0.0654 0.4146 3.1 8i9r:CA, 8i9t:CA, 8i9v:CA, 8i9w:CA, 8i9x:CA, 8i9y:CA, 8i9z:CA, 8ia0:CA
18 6ww7:A 927 124 0.0375 0.0302 0.2258 4.6
19 1mpx:A 614 53 0.0241 0.0293 0.3396 6.6 1mpx:B, 1mpx:C, 1mpx:D
20 8t8s:B 664 185 0.0602 0.0678 0.2432 7.4 3f6k:A, 5mrh:A, 5mri:A, 4msl:A, 4n7e:A, 5nmr:A, 4po7:A, 8t8r:A, 8t8s:A, 6x3l:A, 6x48:A, 6x4h:A
21 3oqq:A 411 34 0.0201 0.0365 0.4412 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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