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BioLiP
>protein
GMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAANKV
PGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAQRHQRRIDILAEYERTHEAPPVPGA

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bes:C 158 158 1.0000 1.0000 1.0000 5.44e-116 2bes:A, 2bes:B, 2bes:D, 2bes:E, 2bet:A, 2bet:B, 2bet:C, 2bet:D, 2bet:E, 1usl:A, 1usl:B, 1usl:C, 1usl:D, 1usl:E, 2vvo:A, 2vvo:B, 2vvo:C, 2vvo:D, 2vvo:E, 2vvp:A, 2vvp:B, 2vvp:C, 2vvp:D, 2vvp:E, 2vvq:A, 2vvq:B, 2vvq:C, 2vvq:D, 2vvq:E
2 6mu0:A 152 150 0.3924 0.4079 0.4133 1.71e-33
3 3hee:A 148 149 0.3481 0.3716 0.3691 2.21e-26 3hee:B, 3ph3:A, 3ph3:B, 3ph4:A, 3ph4:B
4 3k7p:A 153 150 0.3481 0.3595 0.3667 4.47e-26 3k7p:B, 3k7s:A, 3k7s:B, 3k7s:C, 3k7s:D, 3k8c:A, 3k8c:B, 3m1p:A, 3m1p:B
5 4lfl:B 172 141 0.2975 0.2733 0.3333 6.52e-13 4lfl:D, 4lfm:B, 4lfm:D, 4lfn:B, 4lfn:D
6 4lfl:A 142 142 0.2468 0.2746 0.2746 2.74e-12 4lfl:C, 4lfm:A, 4lfm:C, 4lfn:A, 4lfn:C
7 3sgw:A 158 152 0.2468 0.2468 0.2566 1.69e-07
8 4k7i:A 162 31 0.0696 0.0679 0.3548 1.2 4k7i:B, 4k7n:A, 4k7n:B, 4k7n:C, 4k7o:A, 4k7o:C, 4k7o:B, 4mmm:A, 4mmm:E, 4mmm:C, 4mmm:G
9 6joj:A 338 62 0.1266 0.0592 0.3226 1.7 5grn:A, 6jok:A, 6jol:A, 8pqh:A
10 1njr:A 249 47 0.0949 0.0602 0.3191 2.0 1txz:A, 1ty8:A
11 3wur:B 165 105 0.1772 0.1697 0.2667 2.1 3wur:A
12 3emy:A 329 25 0.0570 0.0274 0.3600 4.1
13 7x0f:C 458 78 0.1456 0.0502 0.2949 4.3 7x0e:A, 7x0f:A, 7x0f:B, 7x0f:D, 7x17:A, 7x17:B, 7x17:C, 7x17:D
14 3dxy:A 207 23 0.0633 0.0483 0.4348 4.9 3dxz:A
15 4a2b:A 386 34 0.0696 0.0285 0.3235 6.0 4a2a:A, 4a2a:B, 1e4g:T
16 6gnc:A 287 26 0.0823 0.0453 0.5000 6.3
17 5d4y:A 314 28 0.0759 0.0382 0.4286 6.5 5d4y:B
18 4gi5:B 261 34 0.1076 0.0651 0.5000 7.8 4gi5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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