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BioLiP
>protein
GMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQEHGFISRCFHRKYRIPADVDPLTITSSLSSDGVLTVNG
PRKQV

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4m5s:A 87 86 0.9882 0.9655 0.9767 2.76e-55 4m5t:A, 4m5t:C, 4m5t:E, 4m5t:G
2 3l1e:A 105 82 0.5529 0.4476 0.5732 1.74e-30
3 6gjh:F 87 81 0.5529 0.5402 0.5802 4.00e-29 6gjh:D, 6gjh:H, 6gjh:B, 4mjh:A, 4mjh:C
4 5lum:A 78 73 0.5294 0.5769 0.6164 7.08e-29 5lum:B, 5lum:D, 5lum:C, 5lum:E
5 6f2r:Q 89 75 0.3176 0.3034 0.3600 1.17e-11 6f2r:T, 6f2r:V
6 8yo4:A 442 42 0.1647 0.0317 0.3333 2.2 8ylu:A, 8ylu:B, 8yo4:B, 8yo7:A, 8yo7:B, 8yon:A, 8yon:B
7 2nvv:A 496 45 0.1765 0.0302 0.3333 3.2 2nvv:B, 2nvv:C, 2nvv:D, 2nvv:E
8 3msu:B 426 27 0.0941 0.0188 0.2963 3.5 3msu:A
9 5hcc:A 982 81 0.3059 0.0265 0.3210 4.2 7ad6:A, 8ayh:A, 1cfa:A, 5hcd:A, 5hce:A
10 3a2m:B 300 42 0.1294 0.0367 0.2619 4.8 3a2l:A, 3a2l:B, 3a2m:A
11 4lvq:A 319 33 0.1176 0.0313 0.3030 5.9 4lvq:B
12 1txu:A 254 40 0.1529 0.0512 0.3250 6.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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