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BioLiP
>protein
GMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISRCFHRKYRIPADVDPLTITSSLSSDGVLTVN
GPRKQ

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4m5s:A 87 85 0.9882 0.9655 0.9882 2.30e-57 4m5t:A, 4m5t:C, 4m5t:E, 4m5t:G
2 3l1e:A 105 82 0.5647 0.4571 0.5854 4.54e-33
3 6gjh:F 87 81 0.5647 0.5517 0.5926 8.82e-32 6gjh:D, 6gjh:H, 6gjh:B, 4mjh:A, 4mjh:C
4 5lum:A 78 73 0.5412 0.5897 0.6301 1.20e-31 5lum:B, 5lum:D, 5lum:C, 5lum:E
5 6f2r:Q 89 75 0.3294 0.3146 0.3733 2.48e-14 6f2r:T, 6f2r:V
6 5iov:B 798 38 0.1647 0.0175 0.3684 2.9 5iou:B, 5iou:D, 5iov:D, 5un1:D, 5un1:H
7 3msu:B 426 27 0.0941 0.0188 0.2963 3.7 3msu:A
8 7vbc:A 1477 55 0.1647 0.0095 0.2545 4.6 7vba:A, 7vbb:A
9 7obb:A 1510 55 0.1647 0.0093 0.2545 4.7
10 7ob9:A 1535 55 0.1647 0.0091 0.2545 4.9 7oba:A
11 4lvq:A 319 33 0.1176 0.0313 0.3030 5.9 4lvq:B
12 5hcc:A 982 81 0.3059 0.0265 0.3210 7.5 7ad6:A, 8ayh:A, 1cfa:A, 5hcd:A, 5hce:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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