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BioLiP
>protein
GMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERGFISRCFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRK
QV

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4m5s:A 87 86 0.9878 0.9310 0.9419 2.40e-52 4m5t:A, 4m5t:C, 4m5t:E, 4m5t:G
2 3l1e:A 105 82 0.5488 0.4286 0.5488 5.32e-28
3 5lum:A 78 73 0.5244 0.5513 0.5890 6.01e-27 5lum:B, 5lum:D, 5lum:C, 5lum:E
4 6gjh:F 87 81 0.5366 0.5057 0.5432 5.02e-26 6gjh:D, 6gjh:H, 6gjh:B, 4mjh:A, 4mjh:C
5 6f2r:Q 89 75 0.3049 0.2809 0.3333 5.25e-10 6f2r:T, 6f2r:V
6 5vvj:F 95 39 0.1585 0.1368 0.3333 0.44 5dlj:F, 5dlj:E, 5dqt:F, 5dqt:E, 5dqt:N, 5dqt:M, 5dqu:F, 5dqu:E, 5dqz:F, 5dqz:E, 5ds4:F, 5ds4:E, 5ds5:E, 5ds5:F, 5ds6:E, 5ds6:F, 5vvj:E, 5vvk:E, 5vvk:F, 5vvl:E, 5vvl:F, 5wfe:E, 5wfe:F
7 6zhm:A 269 55 0.1951 0.0595 0.2909 2.4 6zhl:A, 6zjo:A, 6zjo:B
8 8c9b:E 148 78 0.2561 0.1419 0.2692 2.4 8c97:E
9 3msu:B 426 32 0.1098 0.0211 0.2812 2.4 3msu:A
10 7ode:M 165 78 0.2561 0.1273 0.2692 2.7 8c9a:E, 9cl9:E
11 7ppj:A 643 32 0.1341 0.0171 0.3438 2.8 7cux:B, 7cux:C, 7cux:D, 7cux:E, 7cux:F, 7q3z:B, 7q3z:A, 6rr9:A
12 8a3l:e 201 78 0.2561 0.1045 0.2692 3.9 7abz:D, 7ac7:D, 7acj:D, 7acr:D, 5ady:E, 5afi:E, 5aka:E, 8akn:e, 8am9:e, 8ana:e, 8ap4:e, 9ax7:e, 9ax8:E, 8aye:e, 8b0x:e, 7b5k:E, 8b7y:M, 3bbx:E, 8bf7:C, 8bge:C, 8bgh:C, 8bh4:C, 8bhj:C, 8bhl:C, 8bhn:C, 8bhp:C, 8bil:C, 8bim:C, 7bl2:E, 7bl3:E, 7bl4:E, 7bl5:E, 7bl6:E, 6bu8:06, 7bv8:E, 6by1:CE, 6by1:DE, 6c4i:E, 8c8x:E, 8c8y:E, 8c8z:E, 8c90:E, 8c91:E, 8c92:E, 8c93:E, 8c94:E, 8c95:E, 8c96:E, 8c98:E, 8c99:E, 8cam:e, 8ceu:e, 8cgd:e, 8cgk:e, 8cgv:e, 9cg5:e, 9cg6:e, 9cg7:e, 7cpj:E, 4csu:E, 7d6z:E, 7d80:d, 6dnc:H, 8e30:M, 8e32:M, 8e33:M, 8e35:M, 8e36:M, 8e3l:M, 8e3m:M, 8e3o:M, 8e41:M, 8e42:M, 8e43:M, 8e44:M, 8e45:M, 8e46:M, 8e47:M, 8e48:M, 8e49:M, 8eiu:e, 8ekc:E, 8emm:e, 6enf:E, 6enj:E, 6enu:E, 9fbv:e, 8fiz:BF, 8fto:e, 8fzd:E, 8fze:E, 8fzf:E, 8fzg:E, 8fzh:E, 8fzi:E, 8fzj:E, 8g2u:E, 8g31:E, 8g34:E, 8g38:E, 8g6w:e, 8g6x:e, 8g6y:e, 8g7p:E, 8g7q:E, 8g7r:E, 8g7s:E, 5gad:E, 5gae:E, 5gaf:E, 5gag:E, 5gah:E, 6gbz:E, 6gc0:E, 6gc4:E, 6gc6:E, 6gc7:E, 6gc8:E, 6gwt:E, 6gxm:E, 6gxn:E, 6gxo:E, 6gxp:E, 6h4n:E, 5h5u:E, 6h58:E, 6h58:EE, 6hrm:D, 8hsp:e, 8htz:e, 8hu1:e, 6i0y:E, 6i7v:DE, 6i7v:CE, 8ifb:e, 8ifc:e, 5iqr:D, 5it8:CE, 5it8:DE, 8j1z:e, 2j28:E, 3j5l:E, 5j5b:CE, 5j5b:DE, 3j7z:E, 5j7l:CE, 5j7l:DE, 3j8g:E, 5j88:CE, 5j88:DE, 5j8a:CE, 5j8a:DE, 3j9y:E, 3j9z:L6, 5j91:CE, 5j91:DE, 3ja1:LF, 3jbu:e, 3jbv:e, 3jcd:E, 3jce:E, 3jcj:D, 3jcn:E, 5jc9:CE, 5jc9:DE, 7jss:d, 7jsw:d, 7jsz:d, 5jte:BE, 7jt1:d, 7jt2:d, 7jt3:d, 5ju8:BE, 7k00:e, 7k50:d, 7k51:d, 7k52:d, 7k53:d, 7k54:d, 7k55:d, 5kcr:1F, 5kcs:1F, 5kps:D, 5kpv:C, 5kpw:C, 5kpx:C, 5l3p:F, 6lkq:W, 7lv0:d, 7lvk:M, 5lza:E, 5lzb:E, 5lzc:E, 5lzd:E, 5lze:E, 5lzf:E, 7m5d:D, 5mdv:D, 5mdw:D, 5mdy:D, 5mdz:D, 5mgp:E, 7n1p:LD, 7n2c:LD, 7n2u:LD, 7n2v:LD, 7n30:LD, 7n31:LD, 7nbu:e, 5nco:E, 5np6:c, 7nso:E, 7nsp:E, 7nsq:E, 5nwy:R, 7nwt:D, 7nww:E, 7o19:BE, 7o1a:BE, 7o1c:BE, 5o2r:E, 6o9j:E, 6o9k:E, 6ofx:d, 6og7:d, 6ogf:d, 6ogg:d, 6ogi:d, 7oif:E, 7oig:E, 7oii:E, 7oiz:e, 7oj0:e, 6om6:D, 6ore:D, 6orl:D, 6osk:D, 6osq:D, 6ost:D, 6ot3:D, 7ot5:E, 7otc:E, 6ouo:D, 8p16:D, 8p17:D, 8p18:D, 7p3k:e, 6pc5:M, 6pc6:M, 6pc7:M, 6pc8:M, 6pch:M, 6pcq:M, 6pcr:M, 6pcs:M, 6pct:M, 8peg:d, 8phj:e, 6pj6:M, 7pjs:E, 7pjt:E, 7pju:E, 7pjv:E, 7pjw:E, 7pjx:E, 7pjy:E, 7pjz:E, 8pkl:d, 8pva:e, 7q4k:BE, 8q4f:e, 6q97:D, 6q98:D, 6q9a:D, 8qbt:E, 6qdw:e, 7qg8:R, 7qgh:R, 7qgn:R, 7qgr:R, 8qk7:D, 8qoa:e, 7qq3:M, 6qul:E, 8r6c:e, 8r8m:e, 8rpy:E, 8rpz:E, 8rq0:E, 8rq2:E, 6s0k:E, 7s1g:M, 7s1h:M, 7s1i:M, 7s1j:M, 7s1k:M, 7sa4:D, 7ss9:d, 7ssd:d, 7ssl:d, 7ssn:d, 7sso:d, 7ssw:d, 7st2:d, 7st6:d, 7st7:d, 8syl:E, 6szs:E, 8t5d:E, 8t5h:E, 6tbv:L041, 6tc3:L041, 7tos:L04, 4u1u:BE, 4u1u:DE, 4u1v:BE, 4u1v:DE, 4u20:BE, 4u20:DE, 4u24:BE, 4u24:DE, 4u25:BE, 4u25:DE, 4u26:BE, 4u26:DE, 4u27:BE, 4u27:DE, 5u4i:E, 6u48:CE, 5u9f:06, 5u9g:06, 7ug7:LD, 7uph:M, 8upo:l, 8upr:l, 8uql:l, 8uqm:l, 8uqp:l, 8ur0:l, 8urh:l, 8uri:l, 8urx:l, 8ury:l, 4uy8:E, 5uyk:06, 5uyl:06, 5uym:06, 5uyn:06, 5uyp:06, 5uyq:06, 4v4h:BE, 4v4h:DE, 4v4q:BE, 4v4q:DE, 4v4v:BC, 4v4w:BC, 4v50:BE, 4v50:DE, 4v52:BE, 4v52:DE, 4v53:BE, 4v53:DE, 4v54:BE, 4v54:DE, 4v55:BE, 4v55:DE, 4v56:BE, 4v56:DE, 4v57:BE, 4v57:DE, 4v5b:AE, 4v5b:CE, 4v5h:BE, 4v5y:BE, 4v5y:DE, 4v64:BE, 4v64:DE, 4v65:B1, 4v66:B1, 4v69:BE, 4v6c:BE, 4v6c:DE, 4v6d:BE, 4v6d:DE, 4v6e:BE, 4v6e:DE, 4v6k:AF, 4v6l:BF, 4v6m:BE, 4v6n:AF, 4v6o:BF, 4v6p:BF, 4v6q:BF, 4v6r:BF, 4v6s:AF, 4v6t:BE, 4v6v:BF, 4v6y:BE, 4v6z:BE, 4v70:BE, 4v71:BE, 4v72:BE, 4v73:BE, 4v74:BE, 4v75:BE, 4v76:BE, 4v77:BE, 4v78:BE, 4v79:BE, 4v7a:BE, 4v7b:BE, 4v7c:BF, 4v7d:AF, 4v7i:AE, 4v7s:BE, 4v7s:DE, 4v7t:BE, 4v7t:DE, 4v7u:BE, 4v7u:DE, 4v7v:BE, 4v7v:DE, 4v85:BE, 4v89:BE, 4v9c:BE, 4v9c:DE, 4v9d:CE, 4v9d:DE, 4v9o:AE, 4v9o:CE, 4v9o:EE, 4v9o:GE, 4v9p:AE, 4v9p:CE, 4v9p:EE, 4v9p:GE, 8vs9:L04, 8vsa:L04, 6vu3:l, 6vwl:C, 6vwm:C, 6vwn:C, 6vyq:l, 6vyr:l, 6vys:l, 6vyt:l, 6vyu:l, 6vyw:l, 6vyx:l, 6vyy:l, 6vyz:l, 6vz2:l, 6vz3:l, 6vz5:l, 6vz7:l, 6vzj:l, 8w51:E, 5wdt:E, 6wd0:d, 6wd1:d, 6wd2:d, 6wd3:d, 6wd4:d, 6wd5:d, 6wd6:d, 6wd7:d, 6wd8:d, 6wd9:d, 6wda:d, 6wdb:d, 6wdc:d, 6wdd:d, 6wde:d, 6wdf:d, 6wdg:d, 6wdh:d, 6wdi:d, 6wdj:d, 6wdk:d, 6wdl:d, 6wdm:d, 5we4:E, 5we6:E, 4wf1:BE, 4wf1:DE, 5wf0:E, 5wfk:E, 5wfs:E, 6wnt:d, 6wnv:d, 6wnw:d, 4woi:BE, 4woi:CE, 4www:RE, 4www:YE, 6wyv:M, 6x6t:l, 6x7f:l, 6x7k:l, 6x9q:l, 6xdq:l, 6xdr:l, 6xgf:l, 6xii:l, 6xij:l, 6xz7:E, 6xza:E2, 6xzb:E2, 6y69:E, 7y7c:e, 7y7d:e, 7y7e:e, 7y7f:e, 7y7g:e, 7y7h:e, 4ybb:CE, 4ybb:DE, 7yla:M, 6ys3:e, 6ysr:E, 6yss:E, 6yst:E, 6ysu:E, 7z20:e, 7zod:e, 7zp8:e, 7zq5:e, 7zq6:e, 6ztj:BE, 6ztl:BE, 6ztm:BE, 6ztn:BE, 6zto:BE, 6ztp:BE, 7zta:L041, 6zu1:BE
13 4lvq:A 319 42 0.1463 0.0376 0.2857 4.7 4lvq:B
14 8dmu:A 476 18 0.1220 0.0210 0.5556 9.6 8dmu:B, 8dmu:C, 8dmu:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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