Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GMQKLTRINDFNEVLNSRKSVKVFDENYKIPREEMDEIITKATKAPSSVNMQPWRIAVVQSDEMKEKVKESFGFNSRQLT
TSSAMLIIFGDLQNYEKAEQIYGDAVEQQLMTEDIKAQLLDWILPYYKNLSREGMKDIVNIDSSLMAMQLMLTAKAHGYD
TNPIGGFDKENIADIIGYDSDRYVPVLAIAIGKKAQDAHDSVRLPIDDVREFL

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gbh:B 213 213 1.0000 1.0000 1.0000 2.60e-159 3gbh:A, 3gbh:C, 3gbh:D
2 3ge6:A 210 204 0.4413 0.4476 0.4608 2.84e-65 3ge6:B
3 4qlx:A 217 206 0.3709 0.3641 0.3835 3.73e-45 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
4 3bem:B 210 206 0.2770 0.2810 0.2864 2.01e-25 3bem:A
5 3gag:A 206 208 0.2676 0.2767 0.2740 1.64e-22 3gag:B, 3gag:C, 3gag:D
6 2b67:A 201 202 0.2629 0.2786 0.2772 1.54e-17 2b67:B, 2b67:C, 2b67:D
7 1nox:A 200 192 0.2535 0.2700 0.2812 1.81e-15
8 7s14:B 223 224 0.2911 0.2780 0.2768 5.73e-14 7ldq:A, 7rzl:A, 7rzl:B, 7rzp:A, 7rzp:B, 7s14:A, 7s14:C, 7s14:D, 7s1a:A, 7s1a:B, 7t2z:A, 7t2z:B, 7t33:A, 7t33:B
9 7jh4:A 223 227 0.2488 0.2377 0.2335 2.59e-13 7jh4:B, 7jh4:C, 7jh4:D, 7jh4:E
10 3qdl:A 178 192 0.2160 0.2584 0.2396 3.38e-13 3qdl:B, 3qdl:C, 3qdl:D
11 8qyg:B 225 213 0.2676 0.2533 0.2676 1.52e-12 8q5g:A, 8q5g:B, 8qyg:A
12 5j8d:A 216 214 0.2441 0.2407 0.2430 2.70e-11 5j8d:B, 5j8d:C, 5j8d:D, 5j8g:A, 5j8g:B, 5j8g:C, 5j8g:D, 1kqb:A, 1kqb:B, 1kqb:C, 1kqb:D, 1kqc:A, 1kqc:B, 1kqc:C, 1kqc:D, 1kqd:A, 1kqd:B, 1kqd:C, 1kqd:D, 1nec:A, 1nec:B, 1nec:C, 1nec:D
13 2hay:D 222 217 0.2582 0.2477 0.2535 6.75e-11 2hay:A, 2hay:B, 2hay:C
14 6czp:A 219 206 0.2394 0.2329 0.2476 8.53e-11 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
15 1ds7:A 217 205 0.2394 0.2350 0.2488 2.43e-10 8c5e:A, 8c5e:B, 8c5f:A, 8c5f:B, 8c5p:A, 8c5p:B, 8ccv:A, 8ccv:B, 8cj0:A, 8cj0:B, 1ds7:B, 1icr:A, 1icr:B, 1icu:A, 1icu:B, 1icu:C, 1icu:D, 1icv:A, 1icv:B, 1icv:C, 1icv:D, 1idt:A, 1idt:B, 8og3:A, 8og3:B, 1oo5:A, 1oo5:B, 1oo6:A, 1oo6:B, 1oon:A, 1oon:B, 1ooq:A, 1ooq:B, 8qes:A, 8qes:C, 8qes:B, 8qes:D, 8qpo:A, 8qpo:B, 8qpo:C, 8qpo:G, 8qpo:D, 8qpo:E, 8qpo:F, 8qpo:H, 3x21:A, 3x21:B, 3x21:C, 3x21:D, 3x21:E, 3x21:F, 3x21:G, 3x21:H, 3x21:I, 3x21:J, 3x22:A, 3x22:B, 7x32:A, 7x32:C, 7x32:B, 7x32:H, 7x32:D, 7x32:F, 7x32:E, 7x32:G, 7xww:B, 7xww:A, 7xww:H, 7xww:I, 1yki:A, 1yki:B, 1yki:C, 1yki:D, 1ylr:A, 1ylr:B, 1ylu:A, 1ylu:B
16 4eo3:A 321 164 0.1784 0.1184 0.2317 2.44e-09 4eo3:B
17 8dor:A 217 218 0.2535 0.2488 0.2477 6.90e-09 8dor:B, 8dor:C, 8dor:D
18 4ttb:A 189 95 0.1362 0.1534 0.3053 8.19e-09 4ttb:B
19 6wt2:A 221 211 0.2066 0.1991 0.2085 9.23e-09 6wt2:B, 6wt2:C, 6wt2:D
20 4ttc:A 220 64 0.1127 0.1091 0.3750 2.62e-08 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
21 1v5y:A 217 185 0.2066 0.2028 0.2378 2.92e-08 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
22 8cqt:B 164 197 0.2066 0.2683 0.2234 9.56e-08 8cqt:A
23 3tnz:A 222 63 0.1080 0.1036 0.3651 2.73e-07 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
24 3gr3:A 226 242 0.2629 0.2478 0.2314 2.86e-07 3gr3:B
25 5ko7:B 200 90 0.1174 0.1250 0.2778 4.67e-07
26 3gb5:A 185 91 0.1362 0.1568 0.3187 5.81e-07 3to0:A, 3to0:B
27 5ko8:B 218 67 0.0939 0.0917 0.2985 1.94e-06 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
28 3ge5:A 176 190 0.2113 0.2557 0.2368 1.19e-05 3ge5:B
29 4dn2:A 191 212 0.2160 0.2408 0.2170 2.08e-05 4dn2:B
30 4g8s:A 182 205 0.2300 0.2692 0.2390 4.30e-05 4g8s:B
31 3m5k:A 168 103 0.1221 0.1548 0.2524 1.55e-04 3m5k:B
32 3ek3:A 187 69 0.0845 0.0963 0.2609 2.02e-04
33 2wzv:B 223 59 0.0845 0.0807 0.3051 3.12e-04 2wzv:A, 2wzw:A, 2wzw:B
34 5j62:B 209 57 0.0845 0.0861 0.3158 3.85e-04 5j62:A
35 7vqk:A 195 180 0.1878 0.2051 0.2222 4.39e-04 7vqk:B
36 3gfa:A 197 55 0.0892 0.0964 0.3455 6.12e-04 3gfa:B
37 2isj:A 219 175 0.2113 0.2055 0.2571 8.46e-04 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
38 3n2s:A 248 199 0.1972 0.1694 0.2111 0.001 3n2s:B, 3n2s:C, 3n2s:D
39 1zch:A 249 206 0.2207 0.1888 0.2282 0.001
40 7dp0:A 223 54 0.0845 0.0807 0.3333 0.002 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
41 6pz0:A 185 52 0.0845 0.0973 0.3462 0.002 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
42 2fre:A 200 45 0.0798 0.0850 0.3778 0.006 2fre:B
43 1ywq:A 199 55 0.0798 0.0854 0.3091 0.006
44 3koq:A 173 208 0.1925 0.2370 0.1971 0.017 3h4o:A, 3koq:B, 3koq:C, 3koq:D
45 3kwk:A 168 74 0.0892 0.1131 0.2568 0.019
46 5hei:A 246 201 0.2300 0.1992 0.2438 0.026 5hei:B, 5hei:C, 5hei:D, 5hei:E, 5hei:F, 5hei:G, 5hei:H
47 5uu6:C 236 200 0.1784 0.1610 0.1900 0.039 5uu6:A, 5uu6:B, 5uu6:D
48 2r01:A 195 202 0.1878 0.2051 0.1980 0.059
49 3eo8:A 219 59 0.0798 0.0776 0.2881 0.067 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
50 2h0u:A 196 46 0.0516 0.0561 0.2391 0.090
51 5j6c:A 173 49 0.0704 0.0867 0.3061 0.10 5j6c:B
52 3e10:B 167 167 0.1690 0.2156 0.2156 0.11 3e10:A
53 1bkj:A 230 199 0.1925 0.1783 0.2060 0.12 1bkj:B, 2bkj:A, 2bkj:B
54 6wmr:Z 470 85 0.0939 0.0426 0.2353 0.31 6wmt:Z
55 2i7h:A 187 96 0.0986 0.1123 0.2188 0.66 2i7h:B, 2i7h:C, 2i7h:D
56 8dil:A 175 53 0.0657 0.0800 0.2642 1.1 8dil:B, 8dil:C, 8dil:D, 8dil:E, 8dil:F
57 2ymv:A 327 51 0.0798 0.0520 0.3333 1.3
58 3bm1:A 177 53 0.0704 0.0847 0.2830 1.6 3bm1:B
59 7tmf:B 183 38 0.0469 0.0546 0.2632 1.9 7tmf:A, 7tmg:A, 7tmg:B
60 3pxv:B 189 63 0.0892 0.1005 0.3016 2.4 3pxv:A, 3pxv:C, 3pxv:D
61 1sli:A 679 93 0.1127 0.0353 0.2581 3.2 2sli:A, 3sli:A, 4sli:A
62 3k6h:A 191 50 0.0657 0.0733 0.2800 5.8 3k6h:B
63 6h0b:B 521 32 0.0469 0.0192 0.3125 7.5

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218