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BioLiP
>protein
GMMNDYLNFLDGRVSVRRFDPDAVLPNDLIKDMLEHASYAPSGNNFQPWRVVVVKNKNKQEDLKKLAALQPQVATASAVF
LLFGDENAYDLTWWQEFHVQKGIITEAAARAERIRQYFDLHPEDKETQGLRLDVGLFAMNLMQVVRVYGYDSVPMRGVDF
DAIKTYLDMPNGWEPILMLPVGKALQAGNPHVRKSVAEFAEIIE

The query sequence (length=204) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gag:A 206 206 1.0000 0.9903 0.9903 6.73e-151 3gag:B, 3gag:C, 3gag:D
2 3ge6:A 210 203 0.3235 0.3143 0.3251 2.66e-30 3ge6:B
3 3gbh:B 213 208 0.2794 0.2676 0.2740 4.66e-21 3gbh:A, 3gbh:C, 3gbh:D
4 4qlx:A 217 193 0.2794 0.2627 0.2953 6.07e-19 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
5 3bem:B 210 215 0.2843 0.2762 0.2698 6.94e-16 3bem:A
6 2b67:A 201 206 0.2990 0.3035 0.2961 8.59e-12 2b67:B, 2b67:C, 2b67:D
7 1nox:A 200 73 0.1471 0.1500 0.4110 2.21e-10
8 7s14:B 223 181 0.2157 0.1973 0.2431 3.04e-09 7ldq:A, 7rzl:A, 7rzl:B, 7rzp:A, 7rzp:B, 7s14:A, 7s14:C, 7s14:D, 7s1a:A, 7s1a:B, 7t2z:A, 7t2z:B, 7t33:A, 7t33:B
9 8dor:A 217 184 0.2353 0.2212 0.2609 7.98e-09 8dor:B, 8dor:C, 8dor:D
10 7jh4:A 223 168 0.1961 0.1794 0.2381 1.65e-08 7jh4:B, 7jh4:C, 7jh4:D, 7jh4:E
11 5ko7:B 200 180 0.2010 0.2050 0.2278 5.95e-08
12 8qyg:B 225 213 0.2598 0.2356 0.2488 1.83e-07 8q5g:A, 8q5g:B, 8qyg:A
13 2hay:D 222 176 0.2255 0.2072 0.2614 2.23e-07 2hay:A, 2hay:B, 2hay:C
14 1ds7:A 217 184 0.2304 0.2166 0.2554 3.45e-07 8c5e:A, 8c5e:B, 8c5f:A, 8c5f:B, 8c5p:A, 8c5p:B, 8ccv:A, 8ccv:B, 8cj0:A, 8cj0:B, 1ds7:B, 1icr:A, 1icr:B, 1icu:A, 1icu:B, 1icu:C, 1icu:D, 1icv:A, 1icv:B, 1icv:C, 1icv:D, 1idt:A, 1idt:B, 8og3:A, 8og3:B, 1oo5:A, 1oo5:B, 1oo6:A, 1oo6:B, 1oon:A, 1oon:B, 1ooq:A, 1ooq:B, 8qes:A, 8qes:C, 8qes:B, 8qes:D, 8qpo:A, 8qpo:B, 8qpo:C, 8qpo:G, 8qpo:D, 8qpo:E, 8qpo:F, 8qpo:H, 3x21:A, 3x21:B, 3x21:C, 3x21:D, 3x21:E, 3x21:F, 3x21:G, 3x21:H, 3x21:I, 3x21:J, 3x22:A, 3x22:B, 7x32:A, 7x32:C, 7x32:B, 7x32:H, 7x32:D, 7x32:F, 7x32:E, 7x32:G, 7xww:B, 7xww:A, 7xww:H, 7xww:I, 1yki:A, 1yki:B, 1yki:C, 1yki:D, 1ylr:A, 1ylr:B, 1ylu:A, 1ylu:B
15 3of4:A 208 186 0.2157 0.2115 0.2366 4.37e-07 3of4:B, 3of4:C
16 5ko8:B 218 181 0.2010 0.1881 0.2265 7.88e-07 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
17 5j8d:A 216 192 0.2402 0.2269 0.2552 9.32e-07 5j8d:B, 5j8d:C, 5j8d:D, 5j8g:A, 5j8g:B, 5j8g:C, 5j8g:D, 1kqb:A, 1kqb:B, 1kqb:C, 1kqb:D, 1kqc:A, 1kqc:B, 1kqc:C, 1kqc:D, 1kqd:A, 1kqd:B, 1kqd:C, 1kqd:D, 1nec:A, 1nec:B, 1nec:C, 1nec:D
18 5hdj:B 248 182 0.2010 0.1653 0.2253 2.09e-06 5hdj:A
19 3pxv:B 189 78 0.1618 0.1746 0.4231 2.46e-06 3pxv:A, 3pxv:C, 3pxv:D
20 2wzv:B 223 182 0.2206 0.2018 0.2473 3.63e-06 2wzv:A, 2wzw:A, 2wzw:B
21 4dn2:A 191 202 0.2598 0.2775 0.2624 7.62e-06 4dn2:B
22 3gr3:A 226 195 0.2157 0.1947 0.2256 1.21e-05 3gr3:B
23 3ek3:A 187 62 0.1078 0.1176 0.3548 1.31e-05
24 6pz0:A 185 170 0.2157 0.2378 0.2588 1.99e-05 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
25 3gfa:A 197 58 0.0931 0.0964 0.3276 8.75e-05 3gfa:B
26 3ge5:A 176 82 0.1324 0.1534 0.3293 9.49e-05 3ge5:B
27 5j62:B 209 64 0.1029 0.1005 0.3281 9.62e-05 5j62:A
28 8uc3:A 180 196 0.2206 0.2500 0.2296 1.96e-04 8uc3:B
29 6wt2:A 221 166 0.1961 0.1810 0.2410 2.20e-04 6wt2:B, 6wt2:C, 6wt2:D
30 3eo8:A 219 51 0.1029 0.0959 0.4118 2.30e-04 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
31 2fre:A 200 166 0.2108 0.2150 0.2590 2.70e-04 2fre:B
32 4ttb:A 189 61 0.0980 0.1058 0.3279 3.57e-04 4ttb:B
33 4ttc:A 220 61 0.0980 0.0909 0.3279 4.26e-04 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
34 3tnz:A 222 60 0.0931 0.0856 0.3167 7.61e-04 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
35 3eof:A 248 85 0.1275 0.1048 0.3059 0.001 3eof:B
36 3gb5:A 185 58 0.0931 0.1027 0.3276 0.001 3to0:A, 3to0:B
37 8cqt:B 164 52 0.0882 0.1098 0.3462 0.001 8cqt:A
38 1v5y:A 217 185 0.2059 0.1935 0.2270 0.002 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
39 3koq:A 173 178 0.1912 0.2254 0.2191 0.003 3h4o:A, 3koq:B, 3koq:C, 3koq:D
40 3qdl:A 178 82 0.1176 0.1348 0.2927 0.004 3qdl:B, 3qdl:C, 3qdl:D
41 7dp0:A 223 56 0.1078 0.0987 0.3929 0.004 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
42 3e10:B 167 79 0.1078 0.1317 0.2785 0.005 3e10:A
43 4g8s:A 182 190 0.2402 0.2692 0.2579 0.021 4g8s:B
44 4xoq:A 204 187 0.2304 0.2304 0.2513 0.033 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
45 3kwk:A 168 91 0.1225 0.1488 0.2747 0.050
46 4eo3:A 321 62 0.1078 0.0685 0.3548 0.091 4eo3:B
47 5j6c:A 173 53 0.0784 0.0925 0.3019 0.100 5j6c:B
48 2i7h:A 187 44 0.0735 0.0802 0.3409 0.18 2i7h:B, 2i7h:C, 2i7h:D
49 2r01:A 195 44 0.0686 0.0718 0.3182 0.33
50 2h0u:A 196 44 0.0539 0.0561 0.2500 0.35
51 6czp:A 219 191 0.2010 0.1872 0.2147 0.84 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
52 6zj6:AAA 360 126 0.1471 0.0833 0.2381 0.87 4ad2:A, 4ad2:B, 4ad2:C, 4ad2:D, 4ad3:A, 4ad3:B, 4ad3:C, 4ad3:D, 4ad4:A, 4ad5:A, 6fam:A, 6far:A, 6fwg:A, 6fwi:A, 6fwj:A, 6fwl:A, 6fwm:A, 6fwo:A, 6fwp:A, 6fwq:A, 6hmg:A, 6hmh:A, 5lyr:A, 5m03:A, 5m17:A, 5m3w:A, 5m5d:A, 5mc8:A, 5mel:A, 4utf:A, 4v27:A, 4v28:A
53 2isj:A 219 54 0.0882 0.0822 0.3333 0.92 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
54 8dil:A 175 86 0.1078 0.1257 0.2558 1.4 8dil:B, 8dil:C, 8dil:D, 8dil:E, 8dil:F
55 1z16:A 344 102 0.1520 0.0901 0.3039 1.6 1z17:A, 1z18:A
56 1ywq:A 199 42 0.0637 0.0653 0.3095 1.8
57 3m5k:A 168 91 0.0833 0.1012 0.1868 2.3 3m5k:B
58 6bcq:B 983 20 0.0539 0.0112 0.5500 2.7 6bco:B, 6bco:D, 6bco:A, 6bco:C, 6bcq:D, 6bcq:A, 6bcq:C
59 9ash:A 753 80 0.1078 0.0292 0.2750 4.3 9asi:A, 6xn3:A, 6xn4:A, 6xn5:A, 6xn7:A
60 3bm1:A 177 145 0.1520 0.1751 0.2138 5.6 3bm1:B
61 4irx:A 296 31 0.0588 0.0405 0.3871 6.3 4irx:B
62 4r2i:A 207 52 0.0735 0.0725 0.2885 7.1 4kfu:D, 4r2h:A
63 5xj2:A 454 49 0.0735 0.0330 0.3061 8.8 5xj2:B, 5xj2:C, 5xj2:D, 5zq0:A, 5zq1:A, 5zq8:B, 5zq8:A, 5zth:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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