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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMKLGVNLCFAVKRWLEPDRLAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLTIESTFGGLASYTY
NHFLAPTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLYVE
PVPLATEFPSSAADAARLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPWIAAYHIQQTDGQLDRHWSF
TQPGVVTPQRLQDFWDKYALTDQTFFAEILYPFEARDEDVLADMIASVKALKAASP

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qxb:A 297 296 1.0000 0.9966 1.0000 0.0 3qxb:B, 3qxb:C, 3qxb:D
2 6vbz:A 256 75 0.0676 0.0781 0.2667 1.8 6vbz:B
3 9bha:A 793 92 0.0878 0.0328 0.2826 2.4 5a9f:A, 5aga:A, 9bh8:A, 9bh8:B, 9bh9:A, 9bh9:B, 9bha:B, 9c5q:C, 9c5q:A
4 3nsj:A 530 59 0.0541 0.0302 0.2712 2.9 7pag:A, 5ug7:A, 4y1s:A, 4y1t:A
5 5zq6:A 828 183 0.1554 0.0556 0.2514 3.8 5zq4:B, 5zq4:A, 5zq6:C, 5zq7:A, 5zq7:C
6 7cu1:A 535 55 0.0541 0.0299 0.2909 6.9 8ad7:A, 8ad8:A, 7aqu:A, 7aqu:B, 7cu0:A, 7cu0:B, 7cu1:B, 7cu2:A, 7cu2:B, 6h44:A, 6h44:B, 6sls:A, 6sls:B, 6slt:A, 6slt:B
7 8iab:A 704 57 0.0574 0.0241 0.2982 7.6 8iab:B, 8iad:A, 8iad:B, 7xa9:A, 7xa9:B
8 3ayv:D 244 27 0.0372 0.0451 0.4074 7.7 3ayt:A, 3ayt:B, 3ayt:C, 3ayt:D, 3ayv:A, 3ayv:B, 3ayv:C
9 6l5t:A 234 40 0.0372 0.0470 0.2750 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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