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BioLiP
>protein
GMEVLDLVTGPDSVTEIEAFLNPRMGQPPTPESLTEGGQYYGWSRGINLATSDTEDSPGNNTLPTWSMAKLQLPMLNCDT
LQMWEAVSVKTEVVGSGSLLDVHGFNKPTDTVNTKGISTPVEGSQYHVFAVGGEPLDLQGLVTDARTKYKEEGVVTIKTI
TKKDMVNKDQVLNPISKAKLDKDGMYPVEIWHPDPAKNENTRYFGNYTGGTTTPPVLQFTNTLTTVLLDENGVGPLCKGE
GLYLSCVDIMGWRVTRNYDVHHWRGLPRYFKITLRKRWVK

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1sid:B 367 284 1.0000 0.7629 0.9859 0.0 1cn3:A, 1cn3:B, 1cn3:D, 1cn3:E, 5cpw:A, 5cpw:B, 5cpw:C, 5cpw:D, 5cpw:E, 5cpx:A, 5cpx:B, 5cpx:C, 5cpx:D, 5cpx:E, 5cpy:A, 5cpy:B, 5cpy:C, 5cpy:D, 5cpy:E, 5cpz:A, 5cpz:B, 5cpz:C, 5cpz:D, 5cpz:E, 5cq0:A, 5cq0:B, 5cq0:C, 5cq0:D, 5cq0:E, 1sid:A, 1sid:C, 1sid:D, 1sid:E, 1sid:F, 1sie:A, 1sie:B, 1sie:C, 1sie:D, 1sie:E, 1sie:F, 1vps:A, 1vps:B, 1vps:C, 1vps:D, 1vps:E
2 4pos:J 274 286 0.5750 0.5876 0.5629 4.24e-104 4por:B, 4por:A, 4por:C, 4por:D, 4por:E, 4por:F, 4por:H, 4por:G, 4por:I, 4por:J, 4pos:B, 4pos:A, 4pos:C, 4pos:E, 4pos:D, 4pos:G, 4pos:F, 4pos:H, 4pos:I, 4pot:B, 4pot:A, 4pot:C, 4pot:D, 4pot:E, 4pot:G, 4pot:F, 4pot:H, 4pot:I, 4pot:J
3 4mby:A 277 285 0.5750 0.5812 0.5649 6.30e-104 4mby:B, 4mby:C, 4mby:D, 4mby:E, 4mby:G, 4mby:I, 4mby:H, 4mby:J, 4mby:F, 4mbz:B, 4mbz:A, 4mbz:C, 4mbz:E, 4mbz:D, 4mbz:I, 4mbz:H, 4mbz:J, 4mbz:F
4 4u60:C 274 283 0.5643 0.5766 0.5583 1.90e-102 6hku:B, 6hku:C, 6hku:F, 6hku:I, 6hku:J, 6hku:D, 6hkv:A, 6hkv:B, 6hkv:C, 6hkv:D, 6hkv:E, 6hkv:F, 6hkv:G, 6hkv:H, 6hkv:I, 6hkv:J, 4u60:A, 4u60:D, 4u60:E, 4u60:B, 4u61:A, 4u61:B, 4u61:C, 4u61:E, 4u61:H, 4u61:I, 4u61:J, 4u62:B, 4u62:C, 4u62:J
5 6y60:AAA 260 272 0.5357 0.5769 0.5515 1.14e-100 6y60:DDD, 6y60:EEE, 6y60:FFF, 6y60:HHH, 6y60:III, 6y60:JJJ, 6y60:BBB, 6y60:CCC, 6y60:GGG
6 6zlz:B 371 287 0.5500 0.4151 0.5366 1.71e-98 4fmh:B, 4fmh:H, 4fmh:K, 4fmh:M, 4fmh:O, 4fmh:Q, 4fmh:T, 4fmi:A, 4fmi:T, 4fmi:E, 4fmi:M, 4fmj:K, 4fmj:M, 4fmj:O, 4fmj:Q, 4fmj:S, 4fmj:T, 4fmj:H, 6zlz:A, 6zlz:C, 6zlz:D, 6zlz:E, 6zlz:F
7 6y6a:M 269 284 0.5464 0.5688 0.5387 1.98e-96 6y6a:A, 6y6a:B, 6y6a:C, 6y6a:E, 6y6a:F, 6y6a:G, 6y6a:I, 6y6a:J, 6y6a:K, 6y6a:L, 6y6a:N, 6y6a:O, 6y6a:Q, 6y6a:R, 6y6a:S, 6y6a:T, 6y6a:V, 6y6a:X, 6y6a:Y, 6y6a:Z, 6y6a:a, 6y6a:b, 6y6a:c, 6y6a:d, 6y6a:e, 6y6a:f, 6y6a:j, 6y6a:n
8 6y5y:D 285 295 0.5571 0.5474 0.5288 7.78e-96 6y5x:A, 6y5x:C, 6y5x:D, 6y5x:E, 6y5x:I, 6y5y:A, 6y5y:B, 6y5y:C, 6y5y:E, 6y5y:F, 6y5y:G, 6y5y:H, 6y5y:I, 6y5y:J
9 7b6s:FFF 271 284 0.5214 0.5387 0.5141 1.21e-94 7b6s:AAA, 7b6s:BBB, 7b6s:CCC, 7b6s:DDD, 7b6s:EEE, 7b6s:GGG, 7b6s:HHH, 7b6s:III, 7b6s:JJJ, 7b6t:AAA, 7b6t:CCC, 7b6t:DDD, 7b6t:FFF, 7b6t:HHH, 7b6t:JJJ, 7b6t:GGG, 7b6t:III, 7b6u:AAA, 7b6u:BBB, 7b6u:CCC, 7b6u:DDD, 7b6u:EEE, 7b6u:FFF, 7b6u:GGG, 7b6u:HHH, 7b6u:III, 7b6u:JJJ, 7b6v:AAA, 7b6v:BBB, 7b6v:CCC, 7b6v:DDD, 7b6v:EEE, 7b6v:FFF, 7b6v:GGG, 7b6v:HHH, 7b6v:III, 7b6v:JJJ, 6y63:AAA, 6y63:BBB, 6y63:HHH, 6y63:III, 6y63:EEE, 6y63:DDD, 6y63:GGG, 6y64:D, 6y64:F, 6y64:G, 6y64:J, 6y64:B, 6y64:A, 6y64:C, 6y64:E, 6y64:H, 6y64:I
10 6y66:GGG 268 284 0.5536 0.5784 0.5458 1.57e-94 6y66:AAA, 6y66:BBB, 6y66:CCC, 6y66:DDD, 6y66:EEE, 6y66:FFF, 6y66:HHH, 6y66:III, 6y66:JJJ
11 6y9i:CCC 280 292 0.5536 0.5536 0.5308 4.59e-94
12 3bwr:A 267 284 0.5107 0.5356 0.5035 4.86e-91 3bwr:C, 3bwr:E
13 6esb:1 347 284 0.5000 0.4035 0.4930 1.25e-85 7b6a:AAA, 7b6a:EEE, 7b6a:BBB, 7b6a:CCC, 7b6c:DDD, 7b6c:EEE, 7b6c:III, 7b6c:JJJ, 6esb:6, 6esb:2, 6esb:3, 6esb:4, 6esb:5, 4mj0:A, 4mj0:B, 4mj0:C, 4mj0:D, 7zip:DDD, 7ziq:AAA, 7ziq:BBB, 7ziq:DDD
14 7zim:CCC 265 283 0.4929 0.5208 0.4876 5.09e-85 4jcf:C, 3nxd:C, 3nxd:B, 4x0z:B, 4x0z:C, 4x0z:D, 4x10:B, 4x10:C, 4x10:D, 4x11:B, 4x11:E, 4x11:A, 4x12:A, 4x12:B, 4x12:E, 4x13:B, 4x13:C, 4x13:E, 4x14:B, 4x14:C, 4x14:D, 4x15:B, 4x15:C, 4x15:D, 4x16:B, 4x16:C, 4x16:D, 4x17:C, 4x17:D, 4x17:B, 7zil:BBB, 7zil:CCC, 7zil:DDD, 7zim:BBB, 7zim:DDD, 7zin:BBB, 7zin:CCC, 7zin:DDD, 7zio:BBB, 7zio:CCC, 7zio:DDD
15 2xsr:A 309 95 0.0929 0.0841 0.2737 2.0 2xsu:A, 2xsv:A
16 6tv9:A 372 80 0.0786 0.0591 0.2750 7.2 6tv9:B, 6tv9:C, 6tv9:D, 6tv9:E, 6tv9:F, 6tv9:G, 6tv9:H
17 7mq8:LR 773 153 0.1250 0.0453 0.2288 8.3 7mq9:LR, 7mqa:LR
18 7bsp:A 1028 29 0.0500 0.0136 0.4828 8.8 7bsq:A, 7vsh:A
19 6lkn:A 1064 29 0.0500 0.0132 0.4828 8.8 6lkn:E, 6lkn:I, 6lkn:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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