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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMEEDIACVKDLVSKYLADNERLSRQKLAFLVQTEPRMLLMEGLKLLSLCIEIDSCNANGCEHNSEDKSVERILHDHGIL
TLCFVVPDGYKLTGNVLILLECFVRSSPANFEQKYIEDFKKLEQLKEDLKTVNISLIPLIDGRTSFYNEQIPDWVNDKLR
DTLFSLLRY

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7oe3:L 1478 170 0.9645 0.1103 0.9588 5.87e-107 7oea:L, 7oeb:L
2 7ojn:L 2010 170 0.9645 0.0811 0.9588 7.90e-107 5j1n:A, 5j1p:A, 4miw:A, 7oe7:L
3 6klc:A 1436 170 0.9467 0.1114 0.9412 8.51e-107
4 7ojj:L 1785 170 0.9645 0.0913 0.9588 9.00e-107
5 7ojk:L 1843 170 0.9645 0.0884 0.9588 1.38e-106
6 7ela:A 1402 170 0.9467 0.1141 0.9412 1.45e-106
7 7ckl:A 1415 170 0.9231 0.1102 0.9176 2.85e-101
8 7x6s:A 1453 170 0.5621 0.0654 0.5588 8.02e-57 5ltf:A, 5ltn:A, 5ltn:B, 5t2t:A
9 7x6v:A 1381 170 0.5621 0.0688 0.5588 8.06e-57
10 7eju:A 1648 169 0.4734 0.0485 0.4734 3.33e-44
11 7elb:A 1937 168 0.4260 0.0372 0.4286 2.02e-40 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C
12 7el9:A 1731 154 0.3373 0.0329 0.3701 9.96e-24 7el9:D, 7elc:A
13 5cyv:B 143 59 0.1065 0.1259 0.3051 0.25 5cyv:A, 3fm5:C
14 2c1z:A 439 58 0.1006 0.0387 0.2931 0.46 2c1x:A, 2c9z:A
15 3of4:A 208 41 0.0947 0.0769 0.3902 0.47 3of4:B, 3of4:C
16 6ap1:B 322 56 0.0888 0.0466 0.2679 0.85 6ap1:A, 6ap1:C, 6ap1:D, 6ap1:E, 6bmf:A, 6bmf:B, 6bmf:C, 6bmf:D, 6bmf:E, 3eih:A, 3eih:B, 3eih:C, 6ndy:A, 6ndy:B, 6ndy:C, 6ndy:D, 6ndy:E, 6oo2:A, 6oo2:B, 6oo2:C, 6oo2:D, 6oo2:E, 2qpa:A, 5uie:A, 5uie:B, 5uie:C, 5uie:D, 5uie:E, 5xmi:B, 5xmi:C, 5xmi:D, 5xmi:E, 5xmi:F, 5xmk:B, 5xmk:C, 5xmk:D, 5xmk:E, 5xmk:F
17 3f2b:A 994 130 0.2012 0.0342 0.2615 1.6 3f2c:A, 3f2d:A
18 7mdl:A 474 86 0.1420 0.0506 0.2791 2.4 3bcb:A, 8g9z:A, 8g9z:B, 8g9z:C, 8g9z:D, 3hl2:A, 3hl2:B, 3hl2:C, 3hl2:D, 7l1t:A, 7mdl:B, 7mdl:C, 7mdl:D, 4zdl:A, 4zdl:B, 4zdo:A, 4zdo:B, 4zdo:C, 4zdo:D, 4zdp:A, 4zdp:B, 4zdp:C, 4zdp:D
19 8oox:B 438 29 0.0592 0.0228 0.3448 2.9 8oow:A, 8oow:B, 8oow:C, 8oow:D, 8oow:E, 8oow:F, 8oow:G, 8oow:H, 8oow:I, 8oow:J, 8oow:K, 8oow:L, 8oox:A, 8ooz:A, 8ooz:B, 8ooz:C, 8ooz:D, 8ooz:E, 8ooz:F, 8ooz:K, 8ooz:G, 8ooz:H, 8ooz:I, 8ooz:J, 8ooz:L
20 6evj:B 752 42 0.0947 0.0213 0.3810 3.0 6evj:E, 6evk:B, 9f2r:B, 9f37:B, 6fhh:B, 6fhi:B, 5m3h:B, 6szu:B, 6szv:B, 6t0n:B, 6t0r:B, 6t0s:B, 6t0u:B, 6t0v:B, 6t2c:B, 6tw1:B, 4wsb:B
21 7c6d:A 241 72 0.1006 0.0705 0.2361 6.6
22 5iby:A 321 16 0.0473 0.0249 0.5000 8.5 5ich:A, 5ich:B, 5icl:A, 5icl:B, 5idh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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