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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMDKYREIHNKLKEFSPGTLTAVECIDYLDRLYAVRHDIVDQMIKHDWSDNKDSEEAIGKVLLFAGVPSNIITALEKKII
PNHPTGKSLKAFFKMTPDNYKISGTTIEFVEVTVTADVDKGIREKKLKYEAGLTYIEQELHKFFLKGEIPQPYKITFNVV
AVRTDITTQ

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ize:A 180 172 1.0000 0.9389 0.9826 1.84e-122 5ize:B
2 6q99:A 201 171 0.6805 0.5721 0.6725 3.06e-86
3 6lb7:A 304 65 0.1065 0.0592 0.2769 0.022 4nsd:A, 4nsd:B
4 6xqo:I 274 65 0.1065 0.0657 0.2769 0.025
5 3kds:E 427 70 0.1243 0.0492 0.3000 2.1 2ce7:C, 2cea:C, 3kds:F, 3kds:G, 7tdo:A, 7tdo:B, 7tdo:C, 7tdo:D, 7tdo:E, 7tdo:F
6 8btd:Lh 116 44 0.0769 0.1121 0.2955 2.8 8br8:Lh, 8brm:Lh, 8bsi:Lh, 8bsj:Lh, 8btr:Lh, 8fru:g, 7pwg:g, 7pwo:g2
7 7ktr:A 3042 54 0.0888 0.0049 0.2778 4.3
8 4zdr:A 243 56 0.0888 0.0617 0.2679 5.3 1a38:A, 1a38:B, 8a9g:A, 8a9g:B, 4bg6:A, 4bg6:B, 2c1j:A, 2c1j:B, 2c1n:A, 2c1n:B, 3cu8:A, 3cu8:B, 5d2d:A, 5d2d:B, 5d3f:A, 5d3f:B, 7d8h:A, 7d8p:A, 7d8p:B, 7d9v:A, 7d9v:B, 6ef5:D, 6ef5:C, 6ef5:A, 6ef5:B, 6ejl:A, 6ejl:B, 5ewz:A, 5ewz:B, 6eww:A, 6eww:B, 6eww:C, 6eww:D, 5exa:B, 5exa:A, 7exe:A, 7exe:B, 6f08:B, 6f08:I, 6f08:A, 6f08:J, 6f09:P, 6f09:Q, 6f09:R, 6f09:S, 4fj3:A, 4fj3:B, 6fn9:A, 6fn9:B, 6fna:A, 6fna:B, 6fnb:A, 6fnb:B, 6fnc:A, 6fnc:B, 4hkc:A, 4ihl:A, 4ihl:B, 5j31:A, 5j31:B, 5jm4:A, 5jm4:B, 5m35:A, 5m35:B, 5m36:B, 5m36:A, 5m37:B, 5m37:A, 4n7g:A, 4n7y:A, 4n7y:B, 4n84:A, 4n84:B, 5nas:A, 5nas:B, 3nkx:A, 3nkx:B, 2o02:A, 2o02:B, 8p1h:A, 8qdv:A, 8qdv:B, 8qdv:E, 8qdv:G, 1qja:B, 1qja:A, 1qjb:A, 1qjb:B, 3rdh:A, 3rdh:B, 3rdh:C, 3rdh:D, 6rlz:A, 6rlz:B, 5ulo:A, 5ulo:B, 2v7d:A, 2v7d:B, 2v7d:C, 2v7d:D, 8we2:B, 8we2:A, 8wf6:B, 8wf6:A, 8wf6:D, 8wf6:C, 2wh0:A, 2wh0:B, 2wh0:C, 2wh0:D, 4wrq:A, 4wrq:B, 5wxn:A, 5wxn:B, 5xy9:A, 5xy9:B, 6ymo:A, 6ymo:B, 6yo8:A, 6yo8:B, 6yo8:C, 6yo8:D, 6yos:A, 6yos:B, 6zfg:A, 6zfg:B, 7zit:A, 7zit:B
9 7owu:B 395 82 0.1420 0.0608 0.2927 6.0 4c2y:A, 4c2y:B, 4c2z:A, 4c2z:B, 6ehj:A, 6ehj:B, 6f56:A, 6f56:B, 6f56:C, 6f56:D, 6fz2:A, 6fz2:B, 6fz3:A, 6fz3:B, 6fz5:A, 6fz5:B, 3iu1:A, 3iu1:B, 3iu2:A, 3iu2:B, 3iwe:A, 3iwe:B, 3jtk:A, 3jtk:B, 5mu6:A, 5mu6:B, 5npq:B, 5o6h:A, 5o6h:B, 5o6j:A, 5o6j:B, 5o9s:A, 5o9s:B, 5o9t:A, 5o9t:B, 5o9u:A, 5o9u:B, 5o9v:A, 5o9v:B, 7owm:A, 7owm:B, 7own:A, 7own:B, 7owo:A, 7owo:B, 7owp:B, 7owp:A, 7owq:A, 7owq:B, 7owr:B, 7owr:A, 7owu:A, 6pav:B, 6pav:A, 8q23:B, 8q23:A, 8q24:B, 8q24:A, 8q26:A, 8q26:B, 8q2z:A, 8q2z:B, 8q3d:A, 8q3d:B, 8q3s:A, 8q3s:B, 8q3t:A, 8q3t:B, 6qrm:A, 6qrm:B, 7rk3:A, 1rxt:C, 6sjz:B, 6sjz:A, 6sk2:A, 6sk2:B, 6sk3:A, 6sk3:B, 6sk8:A, 6sk8:B, 6skj:A, 6skj:B, 5uut:A, 5uut:B
10 7ea4:A 762 73 0.1361 0.0302 0.3151 6.2 7ea4:B, 7eby:A, 7eby:B, 7eby:C, 7eby:D, 7eby:E, 7eby:F
11 7z55:BBB 189 34 0.0651 0.0582 0.3235 6.5 7z55:AAA
12 1w6t:B 430 69 0.1302 0.0512 0.3188 6.7 1w6t:A
13 2bj7:B 138 73 0.1183 0.1449 0.2740 7.6 2bj1:A, 2bj1:B, 2bj7:A, 2bj8:A, 2bj8:B, 2bj9:A, 2bj9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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