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BioLiP
>protein
GMDKSAKAPAITIFDHRGCSRAPKESSAKSGSQDDEMLVKVASTKVTVSEDVAAKKLQEFIGFKEKGLDGSV

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7tja:I 75 72 1.0000 0.9600 1.0000 3.17e-47 7tja:A, 7tja:R, 7tja:E, 7tja:M, 7tlf:A, 7tlf:E, 7tlf:I, 7tlf:M
2 1qgw:A 76 70 0.8056 0.7632 0.8286 9.24e-34 1xf6:A, 1xg0:A
3 7t8s:B 78 73 0.5972 0.5513 0.5890 3.93e-23 7t8s:F, 7t8s:J, 7t8s:N
4 7tja:G 67 67 0.5417 0.5821 0.5821 8.17e-21 7tja:Q, 7tja:C, 7tja:K, 7tja:O, 7tlf:C, 7tlf:G, 7tlf:K, 7tlf:O
5 1qgw:B 67 53 0.5139 0.5522 0.6981 4.42e-20 1xf6:B, 1xg0:B
6 7t7u:A 81 70 0.4583 0.4074 0.4714 1.58e-15
7 4lms:A 80 68 0.4306 0.3875 0.4559 9.20e-14
8 7t8s:D 70 62 0.4306 0.4429 0.5000 6.35e-13 7t8s:H, 7t8s:L, 7t8s:P
9 7sut:A 78 64 0.4167 0.3846 0.4688 6.47e-13 7sut:E
10 7sut:C 63 57 0.3472 0.3968 0.4386 1.47e-09 7sut:G
11 7t7u:C 70 60 0.3750 0.3857 0.4500 8.67e-09
12 4lms:C 68 62 0.3750 0.3971 0.4355 6.64e-08
13 7ssf:A 72 50 0.3056 0.3056 0.4400 1.15e-04 7ssf:C, 7ssf:E, 7ssf:G
14 7s96:A 63 46 0.2778 0.3175 0.4348 0.020 7s96:C, 7s97:C, 7t89:A, 7t89:C
15 4lmx:C 66 42 0.2361 0.2576 0.4048 0.063 8el3:A, 8el3:J, 8el3:G, 8el3:K, 8el4:A, 8el4:F, 8el5:A, 8el5:J, 8el5:K, 8el5:G, 8el6:A, 8el6:F
16 4lmx:E 66 42 0.2361 0.2576 0.4048 0.078 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
17 6vfx:E 341 57 0.1944 0.0411 0.2456 1.9 6vfs:E, 6vfs:C, 6vfs:D, 6vfx:C, 6vfx:B, 6vfx:D, 6vfx:A
18 6vfx:F 321 57 0.1944 0.0436 0.2456 3.0 6vfs:B
19 6vfs:F 302 57 0.1944 0.0464 0.2456 3.0
20 4lm6:A 62 48 0.2222 0.2581 0.3333 4.1 4lm6:C
21 3kfe:A 487 43 0.1667 0.0246 0.2791 6.7 3kfe:B, 3kfe:C, 3kfe:D, 3kfe:E, 3kfe:F, 3kfe:G, 3kfe:H, 3kfk:A, 3kfk:B, 3kfk:C, 3kfk:D, 5w74:A, 5w74:B, 5w74:C, 5w74:D, 5w74:E, 5w74:F, 5w74:G, 5w74:H
22 3ruq:A 516 43 0.1667 0.0233 0.2791 6.9 3kfb:A, 3kfb:B, 3kfb:C, 3kfb:D, 3kfb:E, 3kfb:F, 3kfb:G, 3kfb:H, 7rak:U, 7rak:A, 7rak:B, 7rak:C, 7rak:D, 7rak:E, 7rak:F, 7rak:G, 7rak:H, 7rak:I, 7rak:J, 7rak:K, 7rak:L, 7rak:M, 7rak:N, 7rak:O, 3ruq:B, 3ruq:C, 3ruq:D, 3rus:A, 3rus:B, 3rus:C, 3rus:D, 3ruv:A, 3ruv:B, 3ruv:C, 3ruv:D, 3ruw:A, 3ruw:B, 3ruw:C, 3ruw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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