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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGT
DKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGT

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6xkb:C 139 139 1.0000 1.0000 1.0000 6.57e-102 6xkb:B, 6xkb:A, 6xkb:E, 6xkb:D
2 3d9k:B 141 137 0.7986 0.7872 0.8102 1.25e-79 3d9k:A, 3d9l:A, 3d9l:B, 3d9m:A, 3d9m:B, 3d9n:A, 3d9n:B, 3d9o:B, 3d9p:A, 3d9p:B
3 2mow:A 161 141 0.2446 0.2112 0.2411 2.95e-06 6gc3:A, 2lo6:A, 6o3w:A, 6o3w:B, 6o3x:A, 6o3x:B, 6o3x:C, 6o3y:A, 6o3y:B, 6o3y:C
4 4jxt:A 130 94 0.1655 0.1769 0.2447 2.51e-05
5 1sza:B 140 97 0.1871 0.1857 0.2680 2.96e-05 2bf0:X
6 4q94:A 129 94 0.1655 0.1783 0.2447 7.81e-04 9b9l:A, 4q94:B, 4q96:A, 4q96:B, 4q96:D, 4q96:E
7 8a7d:Q 273 63 0.1439 0.0733 0.3175 1.7
8 1dli:A 402 108 0.1727 0.0597 0.2222 1.9 1dlj:A
9 2h4z:A 255 67 0.1439 0.0784 0.2985 2.6 2f90:A, 2f90:B, 2h4z:B, 2hhj:A, 2hhj:B, 7n3r:B, 7n3s:A, 7n3s:B, 7thi:A, 7thi:B
10 5f7v:A 388 40 0.0791 0.0284 0.2750 3.7
11 6njy:A 237 68 0.1223 0.0717 0.2500 5.3 6njy:B
12 6ks6:g 520 47 0.1223 0.0327 0.3617 6.1 6ks6:G, 4v81:C, 4v81:k, 4v8r:AG, 4v8r:Ag, 4v8r:BG, 4v8r:Bg, 4v94:C, 4v94:K, 4v94:c, 4v94:k, 7ylw:G, 7ylw:g, 7ylx:G, 7ylx:g, 7yly:G, 7yly:g
13 5mmj:w 82 34 0.0863 0.1463 0.3529 7.3 5mmm:w
14 1gpm:A 501 92 0.1439 0.0399 0.2174 7.9 1gpm:B, 1gpm:C, 1gpm:D
15 4js4:A 468 78 0.1511 0.0449 0.2692 8.4 3c94:A, 4hcb:A, 4hcb:B, 4hcc:A, 4hcc:B, 3hl8:A, 3hp9:A, 4jrp:A, 4jrp:B, 4jrq:A, 4jrq:B, 4js4:B, 4js5:A, 4js5:B
16 2qxf:A 433 78 0.1511 0.0485 0.2692 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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