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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMAFMEKIFPDILEAIRNEEIIKESKKIPMPYFGLFALVIFDKVKGSETSLYEIGEEFGKMLSPKNIEELKKIFKLMNFG
DLEIDENKILLKNPPYKIKLSNPPYQWVSKEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVKEVD

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2oso:A 157 157 1.0000 1.0000 1.0000 1.92e-110 2osd:A
2 3naz:C 613 41 0.0828 0.0212 0.3171 4.8 3naz:D, 3o3c:A, 3o3c:B, 3o3c:C, 3o3c:D, 3rsz:C, 3rsz:D, 3rsz:A, 3rsz:B
3 3nb0:C 646 41 0.0828 0.0201 0.3171 4.8 4kq1:A, 4kq1:B, 4kq1:C, 4kq1:D, 4kq2:A, 4kq2:B, 4kq2:C, 4kq2:D, 4kqm:A, 4kqm:B, 4kqm:C, 4kqm:D, 3nb0:A, 3nb0:B, 3nb0:D, 3rt1:A, 3rt1:C, 3rt1:D, 3rt1:B, 5suk:A, 5suk:B, 5suk:C, 5suk:D, 5sul:A, 5sul:B, 6u77:A, 6u77:B, 6u77:C, 6u77:D, 5uw0:A, 5uw0:B, 5uw0:C, 5uw0:D, 5uw1:A, 5uw1:B, 5uw1:C, 5uw1:D, 5uw4:C, 5uw4:B, 5uw4:A, 5uw4:D, 5ux7:A, 5ux7:B, 5ux7:C, 5ux7:D, 5vnc:A, 5vnc:B, 5vnc:C, 5vnc:D
4 8tvi:A 513 25 0.0701 0.0214 0.4400 5.1 8tvi:B, 8tvi:C, 8tvi:D
5 6co7:A 1061 64 0.0892 0.0132 0.2188 6.3 6co7:B, 6co7:C, 6co7:D
6 2v95:A 342 74 0.1019 0.0468 0.2162 7.1
7 7e2i:D 907 28 0.0573 0.0099 0.3214 7.6 7e2g:D, 7e2h:E
8 1bk9:A 124 44 0.0892 0.1129 0.3182 8.9 1m8r:A, 1m8s:A, 1psj:A
9 8re3:A 445 23 0.0573 0.0202 0.3913 9.9 8re2:A, 8re3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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