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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GLYVGGFVDVVSCPKLEQELYLDPDQVTDYLPVTEPLPITIEHLPETEVGWTLGLFQVSHGIFCTGAITSPAFLELASRL
ADTSHVARAPVKNLPKEPLLEILHTWLPGLSLSSIHPRELSQTPSGPVFQHVSLCALGRRRGTVAVYGHDAEWVVSRFSS
VSKSERAHILQHVSSCRLEDLSTPNFVSPL

The query sequence (length=190) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2pbk:A 228 190 1.0000 0.8333 1.0000 4.90e-139 3njq:A, 3njq:B, 4p2t:A, 4p2t:B, 4p3h:A, 4p3h:B, 2pbk:B, 5ur3:A, 5ur3:B, 5ute:A, 5ute:B, 5utn:A, 5utn:B, 5uv3:A, 5uv3:B, 5uvp:A, 5uvp:B, 5v5d:A, 5v5d:B, 5v5e:A, 5v5e:B
2 1o6e:B 232 181 0.4211 0.3448 0.4420 3.02e-45 1o6e:A
3 1nju:A 230 168 0.3579 0.2957 0.4048 1.45e-31 8j3s:A, 8j3s:B, 8j3s:C, 8j3t:A, 8j3t:B, 1jq7:A, 1jq7:B, 1njt:A, 1njt:B, 1njt:C, 1njt:D, 1nju:B, 1nju:C, 1nju:D, 1nkk:A, 1nkk:B, 1nkk:C, 1nkk:D, 1nkm:A, 7tcz:A, 2wpo:A, 2wpo:B, 2wpo:C, 2wpo:D
4 4v08:B 224 175 0.2842 0.2411 0.3086 3.50e-18 4v08:A
5 1at3:A 217 165 0.2684 0.2350 0.3091 5.19e-17 1at3:B
6 6y0f:C 722 32 0.0737 0.0194 0.4375 3.4 6y0f:A, 6y0f:B, 6y0f:D
7 4bxw:B 287 65 0.0842 0.0557 0.2462 3.8 4bxw:A
8 5o36:A 178 36 0.0737 0.0787 0.3889 5.1 5o19:A
9 2vbi:A 554 54 0.1000 0.0343 0.3519 9.5 2vbi:B, 2vbi:C, 2vbi:D, 2vbi:E, 2vbi:F, 2vbi:G, 2vbi:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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