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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GLYVEKVSGLRKDFIKGVDVSSIIALEESGVAFYNESGKKQDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEK
AIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGL
AGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETSGRYAWIAETLHRHHVDYDVFASSYYPFWHGTLKNLTSVLTS
VADTYGKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVTVQGQANAVRDVIQAVSDVGEAGIGVFYWEPAWIPVGPA
HRLEKNKALWETYGSGWATSYAAEYDPEDAGKWFGGSAVDNQALFDFKGRPLPSLHVFQYVDTGTPF

The query sequence (length=387) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ccr:B 387 387 1.0000 1.0000 1.0000 0.0 2ccr:A, 2gft:A, 2gft:B, 2j74:A, 2j74:B, 1r8l:A, 1r8l:B, 1ur0:A, 1ur0:B, 1ur4:A, 1ur4:B
2 7osk:A 360 385 0.3798 0.4083 0.3818 4.69e-88 7osk:B
3 6q3r:A 334 314 0.2584 0.2994 0.3185 4.06e-45 6q3r:B
4 1hjs:A 332 378 0.2972 0.3464 0.3042 1.79e-41 1hju:A, 1hju:D
5 4bf7:A 335 312 0.2377 0.2746 0.2949 1.14e-39
6 6gpa:A 314 317 0.2532 0.3121 0.3091 1.25e-38 6gpa:B
7 3amg:B 291 171 0.0801 0.1065 0.1813 2.7
8 3amg:A 311 171 0.0801 0.0997 0.1813 3.3 3aof:B, 3aof:A, 3azr:A, 3azr:B, 3azs:A, 3azs:B, 3azt:A, 3azt:D, 3mmw:A, 3mmw:B, 3mmw:C, 3mmw:D
9 8fhb:A 204 140 0.0724 0.1373 0.2000 3.8
10 6x2f:A 1144 34 0.0310 0.0105 0.3529 6.3 7ssg:A, 6x26:A, 6x2n:A, 6x43:A, 6x4w:A, 6x4y:A, 6x50:A
11 6xeo:A 1118 34 0.0310 0.0107 0.3529 6.4
12 8q5u:D 788 69 0.0439 0.0216 0.2464 7.2 6e58:A, 6e58:B, 6mds:A, 6mds:B, 6mdv:A, 6mdv:B, 8q5u:F, 8q5u:E
13 6slo:A 214 52 0.0413 0.0748 0.3077 7.6 6lur:B, 6lur:C, 6lur:D, 6lur:A, 6lur:E, 6slo:C, 6slo:D
14 4dwj:B 203 31 0.0336 0.0640 0.4194 8.1 2ccg:A, 2ccg:B, 2ccj:A, 2ccj:B, 4dwj:A, 4dwj:C, 4dwj:D, 4dwj:F, 4dwj:G, 4dwj:H, 4eaq:A, 4eaq:B, 4gfd:A, 4gfd:B, 4gsy:A, 4gsy:B, 4hdc:A, 4hdc:B, 4hej:A, 4hlc:A, 4hlc:B, 4hld:A, 4hld:B, 4qg7:A, 4qg7:B, 4qga:A, 4qga:B, 4qgf:A, 4qgf:B, 4qgg:A, 4qgg:B, 4qgh:A, 4qgh:B, 4xwa:A, 4xwa:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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