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BioLiP
>protein
GLYLQVGAFANPDAAELLKAKLSGVTAAPVFISSVVRNQQILHRVRLGPIGSADEVSRTQDSIRVANLGQPTLVRPD

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6i09:A 77 77 1.0000 1.0000 1.0000 3.28e-51 6i0a:A, 6i0n:A
2 2cc0:A 192 34 0.1948 0.0781 0.4412 0.099 2cc0:B
3 4oht:A 455 39 0.1558 0.0264 0.3077 0.11 4oht:B, 4ywu:A, 4ywu:B, 4ywv:A, 4ywv:B
4 4ysm:A 475 64 0.2468 0.0400 0.2969 1.9 3ma6:A, 3ma6:B, 4ysj:A, 4ysj:B, 4ysm:B, 4yuq:A, 4yuq:B, 4yzb:A, 4yzb:B
5 8b0e:AAA 440 39 0.1818 0.0318 0.3590 2.0 8b0d:AAA, 7psj:A
6 3vnz:A 466 39 0.1818 0.0300 0.3590 2.3 5g0m:A, 5g0q:A, 5l77:A, 8ogx:A, 8oht:AAA, 8ohu:AAA, 8ohv:AAA, 7psi:A, 7psk:A, 3vo0:A
7 2e9f:B 450 27 0.1688 0.0289 0.4815 3.6 2e9f:A, 2e9f:D, 2e9f:C
8 3iwj:A 500 44 0.1688 0.0260 0.2955 4.3 3iwj:B
9 5v8f:7 725 54 0.1818 0.0193 0.2593 4.7 8b9a:7, 8b9b:7, 8b9c:7, 3jc6:7, 3jc7:7, 8kg6:7, 8kg8:7, 8p5e:7, 8p62:7, 8p63:7, 7pt6:7, 7pt6:G, 7pt7:7, 7pt7:G, 7qhs:7, 6rqc:7, 6sko:7, 8w7m:7, 7z13:7, 7z13:f
10 5mwk:A 1040 16 0.1299 0.0096 0.6250 5.0 5mqm:A, 5mqn:A
11 3iwk:H 497 44 0.1558 0.0241 0.2727 5.7 3iwk:A, 3iwk:B, 3iwk:C, 3iwk:D, 3iwk:E, 3iwk:F, 3iwk:G, 3iwk:I, 3iwk:J, 3iwk:K, 3iwk:L
12 6hvg:A 1278 86 0.2857 0.0172 0.2558 6.8 6hvg:B, 6syq:A, 6syq:B, 6szi:A, 6szi:B, 6t16:B, 6t16:A, 6t18:A, 6t18:B, 6t1p:A, 6t1p:B
13 7el9:A 1731 37 0.1818 0.0081 0.3784 7.2 7el9:D, 7elc:A
14 7elb:A 1937 37 0.1818 0.0072 0.3784 7.2 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C
15 6kki:A 366 44 0.2078 0.0437 0.3636 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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