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BioLiP
>protein
GLYKVNEYVDARDTNMGAWFEAQVVRVTRKEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQDLEVGQVVMLNYN
PDNPKERGFWYDAEISRKRETRTARELYANVVLGDDSLNDCRIIFVDEVFKIER

The query sequence (length=134) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gy5:A 215 133 0.9851 0.6140 0.9925 1.58e-92 3ask:A, 3ask:B, 3ask:D, 3asl:A, 3db3:A, 7fb7:B, 4gy5:B, 6iiw:A, 2lgg:A, 2lgk:A, 2lgl:A, 4qqd:A, 4qqd:B, 3shb:A, 3sou:A, 3sou:B, 3sow:A, 3sow:B, 3sox:A, 3sox:B, 3t6r:B, 3t6r:A, 8wms:A, 5xpi:A, 5yy9:A, 5yy9:B, 3zvy:A, 3zvy:B, 3zvz:B
2 2l3r:A 161 150 1.0000 0.8323 0.8933 2.38e-92 7fb7:A, 5iay:A, 6vyj:A
3 6b9m:A 150 141 0.6866 0.6133 0.6525 4.69e-68 6b9m:B
4 4tvr:A 222 135 0.6119 0.3694 0.6074 2.95e-57
5 6iv6:A 1209 39 0.1269 0.0141 0.4359 0.14
6 3q6k:B 381 30 0.1045 0.0367 0.4667 0.54 3q6k:A
7 2fah:C 608 58 0.1493 0.0329 0.3448 2.1 2faf:A, 2faf:B, 2fah:D, 2fah:A, 2fah:B, 2qzy:A, 2qzy:B
8 4by9:F 366 45 0.1119 0.0410 0.3333 2.9 4by9:I, 4by9:C, 4by9:L, 3nmu:A, 3nmu:B, 3nvi:A, 3nvi:C, 3nvk:A, 3nvk:F
9 2nyk:A 237 82 0.1343 0.0759 0.2195 5.0
10 4a9v:A 581 43 0.1045 0.0241 0.3256 9.0 4a9x:A, 4alf:A, 4alf:B, 4amf:A, 4amf:B, 3zwu:A, 3zwu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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