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BioLiP
>protein
GLVPRGSHMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVG
LSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGWGSSGGHA
SL

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gcy:A 163 162 0.9877 0.9816 0.9877 1.27e-107 8cga:A, 5ect:A, 5edd:A, 3h6d:A, 3hza:A, 3i93:A, 3loj:A, 2py4:A, 1six:A, 1sjn:A, 1sjn:C, 1sjn:B, 1sm8:A, 1sm8:B, 1sm8:C, 1smc:A, 1smc:B, 1smc:C, 1snf:A, 1snf:C, 1snf:B
2 8hrv:B 145 145 0.3642 0.4069 0.4069 8.05e-30 8hrv:A, 8hrv:C
3 7n6s:C 147 136 0.3642 0.4014 0.4338 1.22e-28 7n6s:A, 7n6s:B, 7n6s:F, 7n6s:D, 7n6s:E
4 6mjk:A 144 152 0.3827 0.4306 0.4079 8.92e-24
5 5cct:A 169 174 0.3519 0.3373 0.3276 5.57e-23 5cco:A, 5nyz:A, 5nz2:A, 3zez:A, 3zf0:A, 3zf1:A, 3zf4:A, 3zf5:A, 3zf6:A
6 2ol1:C 125 114 0.3148 0.4080 0.4474 1.01e-22 2oke:A, 2oke:C, 2oke:B, 2ol1:A, 2ol1:B
7 4oop:B 142 148 0.3519 0.4014 0.3851 1.10e-21 4oop:A, 4oop:C
8 6ljj:A 150 128 0.3025 0.3267 0.3828 1.22e-21 3ara:A, 3ara:C, 3ara:B, 3arn:A, 3arn:C, 3arn:B, 3ehw:A, 3ehw:B, 3ehw:C, 3ehw:X, 3ehw:Y, 3ehw:Z, 5h4j:A, 2hqu:A, 2hqu:B, 2hqu:C
9 4wrk:A 158 155 0.3086 0.3165 0.3226 1.03e-19 4gv8:A, 4gv8:C, 4gv8:B, 4gv8:D, 4gv8:F, 4gv8:E, 4wrk:B, 4wrk:C, 4wrk:D, 4wrk:E, 4wrk:F
10 3f4f:A 138 132 0.2716 0.3188 0.3333 9.87e-19 3f4f:B, 3f4f:C, 3p48:A, 3p48:C, 3p48:B
11 6hde:B 152 156 0.3395 0.3618 0.3526 1.64e-18 1eu5:A, 1euw:A, 6hde:A, 6hde:C, 2hrm:A, 1rn8:A, 1rnj:A, 1seh:A, 1syl:A
12 5f9k:B 130 135 0.3025 0.3769 0.3630 4.79e-17 5f9k:A, 5f9k:C
13 1f7r:A 133 128 0.2840 0.3459 0.3594 6.18e-16 1f7k:A, 1f7k:B, 1f7n:A, 1f7n:B, 1f7p:A, 1f7p:C, 1f7p:B, 1f7q:A, 1f7q:C, 1f7q:B
14 6mao:A 137 138 0.2963 0.3504 0.3478 2.85e-15
15 3t64:A 153 138 0.2963 0.3137 0.3478 3.64e-15 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
16 2y8c:C 136 128 0.2778 0.3309 0.3516 1.18e-14 2y8c:B
17 5y5p:D 171 169 0.3210 0.3041 0.3077 2.82e-14 5y5p:A, 5y5p:B, 5y5p:C, 5y5p:E, 5y5p:F, 5y5q:A, 5y5q:B, 5y5q:C
18 4aoo:A 143 141 0.2840 0.3217 0.3262 3.05e-14 4ao5:A, 4ao5:B, 4ao5:C, 4ao5:D, 4ao5:E, 4ao5:F, 4aoo:B, 4aoo:C, 4aoo:D, 4aoz:A, 4aoz:B, 4aoz:C, 4apz:1, 4apz:Y, 4apz:2, 4apz:3, 4apz:4, 4apz:5, 4apz:7, 4apz:6, 4apz:8, 4apz:9, 4apz:a, 4apz:A, 4apz:C, 4apz:B, 4apz:D, 4apz:E, 4apz:F, 4apz:G, 4apz:I, 4apz:H, 4apz:J, 4apz:K, 4apz:L, 4apz:M, 4apz:N, 4apz:O, 4apz:P, 4apz:R, 4apz:Q, 4apz:S, 4apz:U, 4apz:T, 4apz:V, 4apz:W, 4apz:X, 4apz:Z, 4apz:b, 4apz:d, 4apz:c, 4apz:e, 4apz:g, 4apz:f, 4apz:h, 4apz:j, 4apz:i, 4apz:k, 4apz:m, 4apz:l, 4b0h:A, 4b0h:B, 4b0h:C, 2xce:A, 2xce:B, 2xce:C, 2xce:D, 2xce:E, 2xce:F, 2xy3:A, 2xy3:B, 2xy3:C, 2xy3:D, 2xy3:E, 2xy3:F
19 3tp1:A 114 104 0.2469 0.3509 0.3846 1.28e-08 2d4n:A, 3tpn:A, 3tps:A, 3tpw:A, 3tpy:A, 3tq3:A, 3tq4:A, 3tq5:A, 3trl:A, 3trn:A, 3ts6:A, 3tsl:A, 3tta:A
20 6lj3:A 164 132 0.2593 0.2561 0.3182 1.41e-08 6ky9:A, 6ky9:B, 6ky9:C, 6kz6:C, 6kz6:B, 6kz6:A, 6lis:A, 6lis:B, 6lis:C, 6lis:D, 6lis:F, 6lis:E, 6lj3:C, 6lj3:B
21 4xjc:A 177 89 0.1914 0.1751 0.3483 8.94e-05 4xjc:E, 4xjc:C, 4xjc:B, 4xjc:F, 4xjc:D
22 3gf0:A 199 73 0.1296 0.1055 0.2877 1.90e-04 2hxd:A, 1pkj:B, 1pkk:B
23 4a6a:A 189 87 0.1728 0.1481 0.3218 0.009 4a6a:E, 4a6a:B, 4a6a:D, 4a6a:C, 4a6a:F, 4a6a:G, 4a6a:K, 4a6a:H, 4a6a:J, 4a6a:I, 4a6a:L, 2qxx:A, 2qxx:B
24 2v9x:A 193 68 0.1543 0.1295 0.3676 0.045 2j4h:A, 2j4h:B, 2j4q:A, 2j4q:B, 2v9x:C, 2v9x:B, 2v9x:D, 2v9x:F, 2v9x:E, 2v9x:G, 2v9x:I, 2v9x:H, 2v9x:J, 2v9x:L, 2v9x:K, 1xs1:A, 1xs1:C, 1xs1:B, 1xs1:D, 1xs1:F, 1xs1:E, 1xs4:A, 1xs4:C, 1xs4:B, 1xs4:D, 1xs4:F, 1xs4:E, 1xs6:A, 1xs6:C, 1xs6:B, 1xs6:D, 1xs6:F, 1xs6:E
25 2qry:C 318 44 0.1049 0.0535 0.3864 0.12 2qry:A, 2qry:B, 2qry:D
26 4zmr:A 207 58 0.1111 0.0870 0.3103 0.24 4e7o:A, 4e7o:B, 4e7p:A, 4e7p:B, 4zmr:B, 4zms:A, 4zms:B
27 1r1z:A 247 76 0.1667 0.1093 0.3553 0.27 1r1z:B, 1r1z:C, 1r1z:D
28 4wk1:A 92 17 0.0741 0.1304 0.7059 0.32
29 4d3h:B 104 17 0.0741 0.1154 0.7059 0.40 4d3h:A, 4d3h:C
30 2r9q:B 342 93 0.1605 0.0760 0.2796 1.1 2r9q:C
31 8of1:A 505 36 0.1049 0.0337 0.4722 1.3 8of1:B, 8ofm:A, 8ofm:B
32 2l6e:A 94 24 0.0864 0.1489 0.5833 1.6
33 3wnk:A 712 33 0.0988 0.0225 0.4848 1.9 3wnl:A, 3wnm:A, 3wnn:A, 3wnn:B, 3wno:A, 3wno:B, 3wnp:A, 3wnp:B
34 2pyu:A 208 117 0.2346 0.1827 0.3248 2.5 2q16:A, 2q16:B
35 1a40:A 321 60 0.1173 0.0592 0.3167 2.8 1a54:A, 1a55:A, 2abh:A, 1ixg:A, 1ixh:A, 1ixi:A, 1pbp:A, 1qui:A, 1quj:A, 1quk:A, 1qul:A
36 3pmo:A 357 45 0.1358 0.0616 0.4889 3.5 6uec:A
37 5f8f:B 361 12 0.0679 0.0305 0.9167 4.2 5f8e:A, 5f8e:B, 5f8f:A, 5f8f:C
38 5zcm:A 329 25 0.0741 0.0365 0.4800 4.8
39 2jg1:A 318 62 0.1358 0.0692 0.3548 5.4 2jg1:B, 2jg1:C, 2jg1:D, 2jgv:B, 2jgv:D
40 2f17:A 255 23 0.0864 0.0549 0.6087 7.4 2f17:B, 1ig3:A, 1ig3:B
41 6gcn:B 438 16 0.0679 0.0251 0.6875 7.6 6gcn:C, 6gcn:D, 6gco:A, 4ww0:B, 4z8x:A, 4z8x:B, 4z8x:C
42 8vhe:B 421 14 0.0617 0.0238 0.7143 8.8 6adg:A, 6adg:B, 6b0z:A, 6b0z:C, 6b0z:B, 6b0z:D, 8bay:A, 8bay:B, 8bay:C, 6bkx:C, 6bkx:B, 6bkx:A, 6bky:D, 6bky:C, 6bky:E, 6bky:A, 6bky:B, 6bky:F, 6bkz:A, 6bkz:B, 6bl0:A, 6bl0:B, 6bl0:C, 6bl1:B, 6bl1:A, 6bl1:C, 6bl2:C, 6bl2:A, 6bl2:B, 5de1:A, 5de1:B, 8hb9:AAA, 8hb9:BBB, 8hb9:CCC, 8hb9:DDD, 3inm:A, 3inm:B, 3inm:C, 6io0:A, 6io0:B, 5k10:A, 5k10:B, 5k11:A, 5k11:B, 8kib:A, 8kib:B, 8kib:C, 8kib:D, 4kzo:A, 4kzo:B, 4kzo:C, 4l03:A, 4l03:B, 4l03:C, 4l04:A, 4l04:B, 4l04:C, 4l04:D, 4l04:E, 4l04:F, 4l06:A, 4l06:B, 4l06:C, 4l06:D, 4l06:E, 4l06:F, 5l57:A, 5lge:A, 5lge:B, 5lge:C, 5lge:D, 3map:A, 3map:B, 3mar:B, 3mas:A, 3mas:B, 6o2y:A, 6o2y:B, 6o2y:C, 6o2z:A, 6o2z:B, 6pay:A, 6pay:D, 6pay:C, 7pjm:A, 7pjm:B, 7pjm:C, 7pjn:A, 7pjn:B, 7pjn:C, 7pjn:D, 6q6f:A, 6q6f:B, 5svf:A, 5svf:C, 5svf:B, 5svf:D, 1t09:A, 1t09:B, 1t0l:A, 1t0l:B, 1t0l:C, 1t0l:D, 8t7d:A, 8t7n:A, 8t7n:B, 8t7o:A, 8t7o:B, 5tqh:A, 5tqh:B, 5tqh:C, 5tqh:D, 6u4j:A, 6u4j:B, 4umx:A, 4umx:B, 6vei:A, 6vei:B, 6vg0:A, 6vg0:B, 6vg0:C, 8vh9:A, 8vh9:B, 8vha:A, 8vha:B, 8vha:C, 8vha:D, 8vhb:A, 8vhb:B, 8vhb:C, 8vhb:D, 8vhc:A, 8vhc:B, 8vhd:A, 8vhd:B, 8vhd:C, 8vhd:D, 8vhe:A, 8vhe:C, 8vhe:D, 8w49:A, 8w49:B, 8w49:C, 8w49:D, 5yfm:A, 5yfm:B, 5yfm:C, 5yfn:A, 5yzh:A, 5yzh:B, 5yzi:A, 5yzi:B
43 2liw:A 99 18 0.0679 0.1111 0.6111 9.1
44 5cio:A 770 24 0.0926 0.0195 0.6250 9.4 5cio:B
45 5ulj:B 386 14 0.0617 0.0259 0.7143 9.6 5ulj:A
46 2xjp:A 258 90 0.1605 0.1008 0.2889 9.6 4lhn:A, 2xjr:A, 2xjs:A, 2xjt:A, 2xju:A, 2xjv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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