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BioLiP
>protein
GLVPRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPQLFGFGYVPSQICAQVSAEQVDAARSRLRGIA
RDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVAYDVEFPE
MVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLL
VVDLPDADYLQDRRAELHRNWL

The query sequence (length=262) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4izt:A 263 262 0.9962 0.9924 0.9962 0.0 4izs:A, 4izu:A, 4izv:A, 4izw:A, 5ny7:A, 5nyb:A, 5nyc:A, 5nye:A
2 6ypa:B 269 273 0.3015 0.2937 0.2894 1.21e-21 7ovg:A, 7ovg:B, 6ypa:A, 6ypa:C, 6ypa:D
3 3klc:A 261 265 0.2672 0.2682 0.2642 5.26e-19 3klc:B
4 4gyl:A 340 134 0.1450 0.1118 0.2836 1.08e-08 4gyn:A, 4kzf:A
5 5h8i:C 301 214 0.2023 0.1761 0.2477 1.25e-08 5h8i:B, 5h8i:D, 5h8i:E, 5h8i:F, 5h8i:G, 5h8i:J, 5h8i:K, 5h8i:L, 5h8i:M, 5h8i:N, 5h8i:O, 5h8j:B, 5h8j:C, 5h8j:D, 5h8j:E, 5h8j:F, 5h8j:G, 5h8j:J, 5h8j:K, 5h8j:L, 5h8j:M, 5h8j:N, 5h8j:O, 5h8l:B, 5h8l:C, 5h8l:D, 5h8l:E, 5h8l:F, 5h8l:G, 5h8l:J, 5h8l:K, 5h8l:L, 5h8l:M, 5h8l:N, 5h8l:O
6 8hpc:C 303 154 0.1565 0.1353 0.2662 7.34e-07 8hpc:A, 8hpc:B, 8hpc:D, 8hpc:E, 8hpc:F, 8hpc:G, 8hpc:H, 1uf5:A, 1uf5:B, 1uf7:A, 1uf7:B, 1uf8:A, 1uf8:B
7 4hg3:A 304 191 0.1679 0.1447 0.2304 4.13e-06 4hg3:B, 4hg3:C, 4hg3:D, 4hg5:A, 4hg5:B, 4hg5:C, 4hg5:D, 4hgd:A, 4hgd:B, 4hgd:C, 4hgd:D
8 5kha:A 526 258 0.2328 0.1160 0.2364 7.19e-06 5kha:B
9 2e2l:A 317 159 0.1489 0.1230 0.2453 4.96e-05 2e2l:C, 2e2l:F
10 4cyg:A 463 186 0.1450 0.0821 0.2043 0.013 4cyg:B, 7slv:A, 7slx:A, 7sly:A
11 7qxq:A 301 92 0.0954 0.0831 0.2717 0.018 6g75:B, 7ome:A, 7qxq:B, 7qxq:C, 7qxr:A, 7qxr:B, 7qxr:C
12 5gv2:C 307 21 0.0458 0.0391 0.5714 0.54 5gs9:B, 5gs9:C, 5gs9:D, 5gt7:B, 5gv2:A, 5i2c:B, 5i2c:C, 5i2c:D
13 8ihq:A 399 194 0.1794 0.1178 0.2423 0.61 8ihq:B, 8ihq:C, 8ihq:D, 8ihq:E, 8ihq:F, 8ihq:G, 8ihq:H, 8ihr:A, 8ihr:B, 8ihr:C, 8ihr:D, 8ihr:E, 8ihr:F, 8ihr:G, 8ihr:H, 8ihs:A, 8ihs:B, 8ihs:C, 8ihs:D, 8ihs:E, 8ihs:F, 8ihs:G, 8ihs:H, 8j85:A, 8j85:B, 8j85:C, 8j85:D, 8j85:E, 8j85:F, 8j85:G, 8j85:H
14 7po9:A 88 68 0.0802 0.2386 0.3088 0.62 7po9:B
15 6vly:A 293 48 0.0763 0.0683 0.4167 1.5 6vly:B, 6vly:C, 6vly:D
16 4c6h:A 291 106 0.0954 0.0859 0.2358 1.6
17 6f1c:A 291 64 0.0687 0.0619 0.2812 2.2 6f1c:C, 6f1d:A, 6f1h:A, 6f1h:C, 6f39:A, 6f39:B
18 2c4w:A 168 15 0.0420 0.0655 0.7333 2.2 4b6r:A, 4b6r:C, 4b6r:B, 4b6s:A, 4b6s:C, 4b6s:B, 2c57:A, 2c57:B, 2c57:C, 2c57:D, 2c57:E, 2c57:F, 2c57:G, 2c57:H, 2c57:I, 2c57:J, 2c57:K, 2c57:L, 1j2y:A, 2wks:A, 2wks:B, 2wks:C, 2wks:F, 2wks:D, 2wks:E, 2xb9:A, 2xb9:B, 2xd9:A, 2xd9:B, 2xd9:C, 2xda:A
19 6az1:B 211 87 0.0802 0.0995 0.2414 2.8 8a3w:SB, 8a98:SB, 8ovj:SB, 8rxh:SB, 8rxx:SB, 5t2a:AC
20 2o2h:A 294 106 0.1069 0.0952 0.2642 3.8 2o2i:A
21 2imc:B 405 29 0.0496 0.0321 0.4483 4.3 3dse:A, 4hev:A, 4hev:B, 2ima:A, 2ima:B, 2imb:A, 2imb:B, 2imc:A, 7ky2:A, 7ky2:B, 7kyh:A, 7kyh:B, 7kyh:C, 7kyh:D, 7n18:A, 7n18:B, 3nf3:A, 3qix:A, 3qix:B, 3qiy:A, 3qiz:A, 3qj0:A, 5v8p:A, 5v8p:B, 5v8r:A, 5v8r:B, 5v8u:A, 5v8u:B
22 3nbk:D 163 46 0.0649 0.1043 0.3696 4.8 6g6v:A, 3lcj:A, 3nba:A, 3nba:B, 3nba:C, 3nba:D, 3nbk:A, 3nbk:B, 3nbk:C, 3pnb:A, 3pnb:B, 3pnb:C, 3pnb:D, 6qmf:A, 6qmg:A, 6qmh:A, 6qmi:A, 3rba:A, 3rhs:A, 3uc5:A
23 2o5a:A 108 84 0.0840 0.2037 0.2619 5.3
24 4wk1:A 92 17 0.0458 0.1304 0.7059 6.1
25 4cv7:A 111 22 0.0420 0.0991 0.5000 6.3
26 5y88:M 182 64 0.0725 0.1044 0.2969 7.6
27 1s5k:A 153 17 0.0458 0.0784 0.7059 7.7 1s3z:A, 1s3z:B, 1s5k:B, 1s60:A, 2vbq:A, 2vbq:B
28 4axv:A 241 110 0.1031 0.1120 0.2455 8.0
29 6zww:C 749 83 0.0916 0.0320 0.2892 8.0 8po7:B, 8po8:A, 8po8:B, 6zww:A, 6zww:E, 6zww:G
30 3w6z:A 296 14 0.0382 0.0338 0.7143 8.2 3w6u:A, 3ws7:A, 5xvh:A
31 3a15:B 362 20 0.0458 0.0331 0.6000 8.5 3a15:A, 3a15:C, 3a15:D, 3a16:A, 3a16:B, 3a16:C, 3a16:D, 3a17:A, 3a17:B, 3a17:C, 3a17:D, 3a17:E, 3a17:F, 3a17:G, 3a17:H, 3a18:A, 3a18:B, 3a18:C, 3a18:D
32 4d3h:B 104 17 0.0458 0.1154 0.7059 8.5 4d3h:A, 4d3h:C
33 2qry:C 318 17 0.0420 0.0346 0.6471 8.6 2qry:A, 2qry:B, 2qry:D
34 5dtu:A 404 105 0.1107 0.0718 0.2762 8.8
35 3wic:A 360 49 0.0611 0.0444 0.3265 8.8 3wic:B, 3wic:C, 3wic:D, 3wid:A, 3wid:B, 3wid:C, 3wid:D, 3wie:A, 3wie:B, 3wie:C, 3wie:D
36 8uw3:A 1265 71 0.0725 0.0150 0.2676 9.3 7n8s:A, 7n94:A, 7n94:B, 8sp5:A, 8sp5:B, 8sp7:A, 8sxt:A, 8sxu:A, 1vyb:B
37 8aq2:A 520 86 0.0916 0.0462 0.2791 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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