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BioLiP
>protein
GLVDAMRGPTAIANEPRAPLLYPTENKMQPPTIPHKIDGYQLDKDFNRCMFCHARTAIPVSITHYMDRDNNVLADVSPRR
YFCTQCHVPQADTKPLIGNNFVDVDTIL

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ml1:B 109 108 1.0000 0.9908 1.0000 6.86e-79 3o5a:B
2 1ogy:B 126 106 0.4907 0.4206 0.5000 2.62e-30 1ogy:D, 1ogy:F, 1ogy:H, 1ogy:J, 1ogy:L, 1ogy:N, 1ogy:P
3 1jni:A 62 66 0.2870 0.5000 0.4697 3.93e-15
4 5k1a:A 239 81 0.1944 0.0879 0.2593 0.056 5k1a:C, 5k1a:E, 5k1a:G
5 8pg0:A 511 51 0.1296 0.0274 0.2745 0.24
6 5k1b:A 264 77 0.1852 0.0758 0.2597 0.28
7 3nmn:D 276 25 0.0833 0.0326 0.3600 0.87 3kdj:B, 3nmn:B
8 7czm:B 94 29 0.1204 0.1383 0.4483 1.0
9 2cfo:A 484 35 0.1204 0.0269 0.3714 2.0
10 8yfk:G 99 30 0.1296 0.1414 0.4667 2.7 7czm:A, 7d0e:A, 8yfk:A, 8yfk:C, 8yfk:E, 8yfl:A, 8yfl:C, 8yfm:A, 8yfm:D, 8yfn:A, 8yfn:C
11 5d8b:G 147 61 0.1481 0.1088 0.2623 2.8 5a9z:AJ, 5aa0:AJ, 6c5l:BK, 6c5l:DK, 3cjt:B, 3cjt:F, 3cjt:J, 3cjt:N, 5d8b:CB, 6gsl:48, 5hau:1K, 5hau:2K, 5imq:3, 5imr:3, 5j8b:K, 4v4x:BL, 4v4y:BL, 4v4z:BL, 4v5e:BK, 4v5e:DK, 4v5f:BK, 4v5f:DK, 4v5j:BK, 4v5j:DK, 4v5m:BK, 4v5n:BK, 4v67:BK, 4v67:DK, 4v68:BL, 4v6f:DL, 4v9h:BK, 4v9j:BK, 4v9j:DK, 4v9k:BK, 4v9k:DK, 4v9l:BK, 4v9l:DK, 4v9m:BK, 4v9m:DK, 4v9n:BK, 4v9n:DK, 4w29:BK, 4w29:DK, 4w2e:K, 4wpo:AL, 4wpo:CL, 4wqf:AL, 4wqf:CL, 4wqu:AL, 4wqu:CL, 4wqy:AL, 4wqy:CL, 4xej:AL11, 4xej:BL11, 5zlu:f
12 3cf5:F 144 46 0.1204 0.0903 0.2826 3.6 3dll:F, 5dm6:F, 5dm7:F, 4io9:F, 4ioa:F, 4ioc:F, 5jvg:F, 3pio:F, 3pip:F, 1sm1:G, 4v49:BG, 4v4a:BG, 4v4g:BJ, 4v4g:DJ, 4v4g:FJ, 4v4g:HJ, 4v4g:JJ, 1xbp:G, 2zjp:F, 2zjq:F, 2zjr:F
13 1uf2:A 967 22 0.0833 0.0093 0.4091 5.0
14 4hsr:B 535 40 0.1481 0.0299 0.4000 7.4 4hst:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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