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BioLiP
>protein
GLTIYFKKPDSWGTPHLYYYDTNPKVDEPTWSEAPEMEHYEGDWYTHTIEGVESVRLLFKDRGTNQWPGPGEPGFFRDQD
GWFDGEWHVDRP

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2c3h:B 94 92 1.0000 0.9787 1.0000 4.23e-65 2c3h:A, 2c3h:H, 2c3h:C, 2c3h:D, 2c3h:E, 2c3h:F, 2c3h:G
2 1xdq:C 264 31 0.1413 0.0492 0.4194 0.93 1xdq:A, 1xdq:B, 1xdq:D, 1xdq:E
3 3rsc:A 397 18 0.1304 0.0302 0.6667 1.4 3iaa:A, 3iaa:B, 3rsc:B
4 4dz6:A 168 68 0.1957 0.1071 0.2647 1.5 4dz6:B, 4dz6:C, 4dz6:D, 4dz6:E, 4dz6:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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