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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GLSDWELAAARAAIARGLDEDLRYGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDG
ARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNH
RLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAP
TVMLESSGGLSLQTAATYAETGVDYLAVGALTHSVRVLDIGLDM

The query sequence (length=284) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1qpn:A 284 284 1.0000 1.0000 1.0000 0.0 1qpn:B, 1qpn:C, 1qpn:D, 1qpn:E, 1qpn:F, 1qpq:A, 1qpq:B, 1qpq:C, 1qpq:D, 1qpq:E, 1qpq:F, 1qpr:A, 1qpr:B, 1qpr:C, 1qpr:D, 1qpr:E, 1qpr:F
2 7xgl:A 297 275 0.5599 0.5354 0.5782 1.82e-90 7xgl:B, 7xgm:A, 7xgm:B, 7xgn:A, 7xgn:B
3 1qap:A 289 275 0.4155 0.4083 0.4291 1.35e-60 1qap:B
4 2b7n:A 273 275 0.3451 0.3590 0.3564 3.18e-54 2b7n:B, 2b7n:C, 2b7p:A, 2b7p:B, 2b7p:C, 2b7q:A, 2b7q:B, 2b7q:C
5 3tqv:B 280 273 0.3592 0.3643 0.3736 1.31e-53 3tqv:A
6 3gnn:A 266 278 0.3662 0.3910 0.3741 3.69e-39
7 4i9a:A 288 270 0.2993 0.2951 0.3148 2.69e-35 4i9a:B
8 3gnn:B 244 207 0.2711 0.3156 0.3720 4.10e-32
9 5ayy:A 289 265 0.3099 0.3045 0.3321 1.82e-30 5ayy:B, 5ayy:C, 5ayy:D, 5ayy:E, 5ayy:F, 5ayy:G, 5ayy:H, 5ayy:I, 5ayz:A, 5ayz:B, 5ayz:C, 5ayz:D, 5ayz:E, 5ayz:F, 5ayz:G, 5ayz:H, 5ayz:I, 5ayz:J, 5ayz:K, 5ayz:L, 4kww:A, 4kww:B, 4kww:C, 4kww:D, 4kww:E, 4kww:F
10 3c2v:A 270 286 0.2852 0.3000 0.2832 5.06e-25 3c2f:A, 3c2o:A, 3c2r:A, 3c2r:B
11 4lps:A 215 51 0.0493 0.0651 0.2745 1.1 4lps:B
12 4j8f:A 551 57 0.0739 0.0381 0.3684 1.2 5aqw:A, 5aqx:A, 5aqy:A, 5aqz:A, 5ar0:A, 3atu:A, 3atv:A, 3ay9:A, 5bn8:A, 5bn9:A, 5bpl:A, 5bpm:A, 3d2f:B, 3d2f:D, 2e88:A, 2e8a:A, 7f4x:A, 7f4z:A, 7f50:A, 7fgm:A, 6fhk:A, 6fhk:B, 6g3r:A, 6g3s:A, 3gdq:A, 1hjo:A, 4io8:A, 3jxu:A, 7kw7:D, 5mkr:A, 5mks:A, 7q4r:A, 1s3x:A, 1xqs:C, 1xqs:D, 6zyi:A
13 8fnv:A 770 28 0.0387 0.0143 0.3929 2.4 8fnv:B, 8fnv:C, 8fnv:D, 8fnv:E, 8fnv:F, 8fnv:G, 8fnv:H, 8fnv:I, 8fnv:J, 8fnv:K, 8fnv:L, 8fnw:A, 8fnw:B, 8fnw:C, 8fnw:D, 8fnw:E, 8fnw:F, 8fnw:G, 8fnw:H, 8fnw:I, 8fnw:J, 8fnw:K, 8fnw:L
14 7kw7:C 511 57 0.0739 0.0411 0.3684 2.5
15 2egv:A 229 86 0.0775 0.0961 0.2558 3.7 2egv:B, 2egw:A, 2egw:B
16 1srr:C 121 83 0.0739 0.1736 0.2530 9.5 1f51:E, 2ftk:E, 2ftk:F, 2ftk:G, 2ftk:H, 1pey:A, 1pey:B, 1pey:C, 3q15:C, 1srr:A
17 8ppt:A 447 103 0.1056 0.0671 0.2913 9.7 6hmf:A, 6hmf:B, 5ihe:A, 5ihe:B, 8ppu:A, 8ppv:A, 6t8h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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