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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GLRQPAPFSDEIEVDFSKPYVRVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTH
NFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEG
ISTSDIITRIVRDYDVY

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4mvd:B 253 177 1.0000 0.6996 1.0000 8.44e-135 3hl4:A, 3hl4:B, 4mvc:A, 4mvc:B, 4mvd:A, 4mvd:D, 4mvd:C, 4mvd:F, 4mvd:E, 4mvd:H, 4mvd:G
2 4zcs:A 141 140 0.4068 0.5106 0.5143 3.76e-53 7pui:A, 7pve:A, 7pvf:A, 7pvg:A, 7py9:A, 7pya:A, 7pyb:A, 7pyc:A, 7q2i:A, 7q2k:A, 7q2l:A, 7q2m:A, 7q2v:A, 7q3m:A, 7q3w:A, 7q9v:A, 7q9w:A, 7qa7:A, 7qad:A, 7qd3:A, 7qvn:A, 7qvo:A, 7z9v:A, 4zcp:A, 4zcq:A, 4zcr:A, 4zcs:C, 4zcs:E, 4zcs:B, 4zcs:D, 4zcs:F
3 4xsv:A 306 137 0.3220 0.1863 0.4161 1.95e-27 3elb:A
4 4xsv:A 306 138 0.2768 0.1601 0.3551 5.35e-19 3elb:A
5 1coz:A 126 140 0.2712 0.3810 0.3429 6.35e-12 1coz:B, 1n1d:A, 1n1d:B, 1n1d:C, 1n1d:D
6 3glv:B 122 70 0.1243 0.1803 0.3143 1.58e-05
7 5x3d:A 126 98 0.1808 0.2540 0.3265 0.005
8 7zc6:A 191 83 0.1299 0.1204 0.2771 0.33
9 4z9n:B 324 31 0.0734 0.0401 0.4194 0.62 4z9n:A, 4z9n:C, 4z9n:D, 4z9n:E, 4z9n:F
10 5l4g:L 389 61 0.0904 0.0411 0.2623 0.78 5gjq:L, 5gjr:L, 5gjr:z, 5m32:f, 6msb:E, 6msd:E, 6mse:E, 6msg:E, 6msh:E, 6msj:E, 7qxn:E, 7qxp:E, 7qxu:E, 7qxw:E, 7qxx:E, 7qy7:E, 7qya:E, 5t0c:AE, 5t0c:BE, 5t0g:E, 5t0h:E, 5t0i:E, 5t0j:E, 5vfp:E, 5vfr:E, 5vfs:E, 7w37:E, 7w38:E, 7w39:E, 7w3a:E, 7w3b:E, 7w3c:E, 7w3f:E, 7w3i:E, 7w3j:E, 7w3k:E, 7w3m:E, 6wjd:E, 6wjn:E
11 1mpa:H 225 36 0.0734 0.0578 0.3611 2.8 2mpa:H
12 6nrz:A 517 73 0.1073 0.0368 0.2603 5.4 6nrz:B, 6ns0:A, 6ns0:B, 6o3f:A, 6o3f:B
13 8h2w:B 984 88 0.1073 0.0193 0.2159 5.4 8h2w:A, 5nz8:B
14 3mia:A 325 31 0.0791 0.0431 0.4516 7.3 4bcf:A, 4bcg:A, 4bch:A, 4bci:A, 4bcj:A, 3blq:A, 3blr:A, 6gzh:A, 8i0l:A, 4imy:A, 4imy:C, 4imy:E, 8k5r:A, 3lq5:A, 3my1:A, 7nwk:A, 4ogr:A, 4ogr:E, 4ogr:I, 3tn8:A, 6w9e:A, 6z45:A
15 2wc5:A 141 78 0.1073 0.1348 0.2436 10.0 2wc6:A, 2wch:A, 2wcj:A, 2wcl:A, 2wcm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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