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BioLiP
>protein
GLQHYKIAMDPALVRLGSMISNRYKYFRWTKRTALVSFMYVVVVPSTIGYLAYKTDGLWDLRAKRRGDLISER

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7zmg:j 75 73 1.0000 0.9733 1.0000 8.22e-50 7zmb:j, 7zme:j, 7zmh:j
2 7o6y:j 90 56 0.2740 0.2222 0.3571 1.44e-08 7o71:j, 6rfr:j, 6y79:j
3 2rak:A 382 27 0.1370 0.0262 0.3704 0.91
4 3wew:A 233 26 0.1507 0.0472 0.4231 5.1
5 2okj:B 504 68 0.2192 0.0317 0.2353 5.4 2okj:A, 3vp6:A, 3vp6:B
6 7ayq:A 808 26 0.1370 0.0124 0.3846 6.8 7a3i:A
7 6rf0:C 275 51 0.1644 0.0436 0.2353 7.5 8cl7:A, 8cl8:A, 7q36:A, 6rex:A, 6rex:B, 6rex:C, 6rex:D, 6rex:E, 6rez:A, 6rez:B, 6rez:C, 6rez:D, 6rez:E, 6rf0:A, 6rf0:E, 6rf0:B, 6rf0:D, 6rf1:A, 6rf1:E, 6rf1:B, 6rf1:C, 6rf1:D, 6rf3:A, 6rf3:B, 6rf3:C, 6rf3:D, 6rf3:E, 6rf4:A, 6rf4:B, 6rf4:C, 6rf4:D, 6rf4:E, 6rf5:A, 6rf6:A, 6rf7:A, 6rf9:A, 6rfa:A, 6rfb:A, 6rfc:A, 6tk1:A, 6tk2:A, 6tk3:A, 6tk4:A, 6tk5:A, 6tk6:A, 6tk7:A, 3x3b:A, 3x3c:A, 4xtl:A, 4xtn:A, 4xtn:B, 4xtn:C, 4xtn:D, 4xtn:E, 4xtn:F, 4xtn:G, 4xtn:H, 4xtn:I, 4xtn:J, 4xto:A, 4xto:B, 4xto:C, 4xto:D, 4xto:E, 6xyt:A, 6xyt:B, 6xyt:C, 6xyt:D, 6xyt:E, 6yby:A, 6ybz:A, 6ybz:B, 6ybz:C, 6ybz:D, 6ybz:E, 6yc0:A, 6yc0:B, 6yc0:C, 6yc0:D, 6yc0:E, 6yc1:A, 6yc1:B, 6yc1:C, 6yc1:D, 6yc1:E, 6yc2:A, 6yc2:B, 6yc2:C, 6yc2:D, 6yc2:E, 6yc3:A, 6yc3:B, 6yc3:C, 6yc3:D, 6yc3:E, 6yc4:A, 6yc4:B, 6yc4:C, 6yc4:D, 6yc4:E, 6yt4:A, 6yt4:B, 6yt4:D, 6yt4:E, 6yt4:C
8 7svm:A 852 26 0.1370 0.0117 0.3846 7.6 7a3g:B, 7a3g:A, 7a3i:B, 7a3i:C, 7a3j:C, 7a3j:A, 7a3j:B, 7a3k:C, 7a3k:A, 7a3k:B, 7a3l:A, 7a3l:B, 7a3l:C, 7ayq:B, 7ayr:A, 7ayr:B, 6eop:A, 6eop:B, 6eop:C, 6eot:A, 6eot:B, 6eot:D, 6eot:G, 6eot:I, 6eot:K, 6hp8:A, 6hp8:B, 6hp8:C, 7or4:B, 7or4:A, 7oz7:A, 7oz7:B, 6qzw:A, 6qzw:B, 6qzw:C, 7svm:B, 7svm:C, 7svo:A, 7svo:B, 7svo:C, 6trw:A, 6trw:B, 6trw:C, 6trx:B, 6trx:C, 6trx:A
9 7ov8:A 303 61 0.2192 0.0528 0.2623 8.0 7ov2:A, 7ov3:A, 5uq6:A, 1ute:A
10 4gme:A 403 31 0.1370 0.0248 0.3226 8.9 4gme:C, 3vcn:A, 3vcn:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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