Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GLPVYVTPGSGQFMTTDDMQSPCALPWYHPTKEIFIPGEVKNLIEMCQVDTLIPINSTQSNIGNVSMYTVTLSPQTKLAE
EIFAIKVDIASHPLATTLIGEIASYFTHWTGSLRFSFMFCGTANTTLKVLLAYTPPGIGKPRSRKEAMLGTHVVWDVGLQ
STVSLVVPWISASQYRFTTPDTYSSAGYITCWYQTNFVVPPNTPNTAEMLCFVSGCKDFCLRMARDTDLHKQTGPITQ

The query sequence (length=238) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1aym:3 238 238 1.0000 1.0000 1.0000 0.0 1ayn:3, 1c8m:3, 1ncr:C, 1nd2:C, 1nd3:C, 1qju:3, 1qjx:3, 1qjy:3
2 2hwd:3 238 238 0.8151 0.8151 0.8151 3.67e-144 2hwe:3, 2hwf:3, 1r1a:3
3 8ay4:C 237 238 0.7311 0.7342 0.7311 1.14e-135 3dpr:C, 1fpn:3, 1v9u:3
4 6sk7:C 214 214 0.6891 0.7664 0.7664 2.30e-130
5 9fjc:3 238 233 0.4916 0.4916 0.5021 9.15e-91
6 6zck:C 238 233 0.5000 0.5000 0.5107 1.14e-89
7 8ayx:C 238 228 0.5000 0.5000 0.5219 1.66e-86 8ayy:C, 5o5b:3, 5o5p:3
8 5osn:C 243 243 0.5210 0.5103 0.5103 1.16e-83 6t48:C, 6t4c:C
9 8ayz:C 235 228 0.4832 0.4894 0.5044 1.51e-83 1eah:3
10 6gzv:C 238 233 0.4664 0.4664 0.4764 3.47e-83 6zcl:C
11 5bnn:C 247 231 0.4496 0.4332 0.4632 1.14e-75 5bno:C, 5bnp:C, 6crp:B, 6cs3:B, 6cv1:B, 6cvb:B, 7ebr:B, 6mzi:B, 6wdt:C
12 6ppo:B 235 232 0.4496 0.4553 0.4612 3.97e-75 6psf:B
13 4aed:C 242 241 0.4328 0.4256 0.4274 3.95e-65
14 1z7z:3 192 186 0.3697 0.4583 0.4731 5.42e-62
15 5cfc:B 232 189 0.2647 0.2716 0.3333 1.63e-33 5cfd:B
16 1tme:3 230 198 0.2899 0.3000 0.3485 3.96e-32
17 5nem:3 220 230 0.2437 0.2636 0.2522 1.22e-21
18 4ctf:D0 226 234 0.2899 0.3053 0.2949 4.16e-21 4ctf:D3, 4ctf:D1, 4ctf:DZ, 4ctf:D2, 4ctf:D4, 4ctf:D7, 4ctf:D5, 4ctf:D8, 4ctf:D6, 4ctf:D9, 4ctf:Dc, 4ctf:DA, 4ctf:DD, 4ctf:DB, 4ctf:DE, 4ctf:DC, 4ctf:DF, 4ctf:DI, 4ctf:DG, 4ctf:DJ, 4ctf:DH, 4ctf:DK, 4ctf:DN, 4ctf:DL, 4ctf:DO, 4ctf:DM, 4ctf:DP, 4ctf:DS, 4ctf:DQ, 4ctf:DT, 4ctf:DR, 4ctf:DU, 4ctf:DX, 4ctf:DV, 4ctf:DY, 4ctf:DW, 4ctf:Da, 4ctf:Dd, 4ctf:Db, 4ctf:De, 4ctf:Dh, 4ctf:Df, 4ctf:Di, 4ctf:Dg, 4ctf:Dj, 4ctf:Dm, 4ctf:Dk, 4ctf:Dn, 4ctf:Dl, 4ctf:Do, 4ctf:Dr, 4ctf:Dp, 4ctf:Ds, 4ctf:Dq, 4ctf:EA, 4ctf:ED, 4ctf:EB, 4ctf:EE, 4ctf:EC, 2wff:3, 2ws9:3, 2xbo:3
19 8uux:B 515 92 0.1050 0.0485 0.2717 0.002 6c6q:A, 6c6q:B, 6e47:A, 6e47:B, 6e48:A, 6e48:B, 6h6l:A, 6h6l:B, 6h6l:C, 6h6l:D, 6h6m:A, 6h6m:B, 6h6m:C, 6h6m:D, 6p4j:A, 6p4j:B, 6p4j:C, 6p4k:A, 6p4k:B, 6p4k:C, 8uux:A, 8uv3:A, 8uv3:C, 6xw6:A, 6xw6:B, 6xw7:A, 6xw7:B, 6xw7:E, 6xw7:F
20 7tfk:A 360 41 0.0504 0.0333 0.2927 1.5 7tfl:A
21 8dr5:A 646 41 0.0504 0.0186 0.2927 1.8 8dqx:A, 8dqz:A, 8dr0:A, 8dr1:A, 8dr3:A, 8dr4:A, 8dr6:A, 8dr7:A, 1sxj:A, 7tfh:A, 7tfi:A, 7tfj:A, 7thj:A, 7thv:A, 7ti8:A, 7tib:A, 7tic:A, 7tid:A, 7tku:A, 7u19:A, 7u1a:A, 7u1p:A
22 8b2u:A 248 37 0.0420 0.0403 0.2703 2.9 8b1s:A, 1h2c:A, 1h2d:A, 1h2d:B, 7k5d:A, 7k5l:A
23 1io0:A 166 78 0.0840 0.1205 0.2564 4.6

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218