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BioLiP
>protein
GLPVIGRVAADAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8b0v:A 124 124 1.0000 1.0000 1.0000 2.43e-86 8b0v:B
2 3jsp:A 194 123 0.6532 0.4175 0.6585 7.79e-55 3jso:A, 3jso:B, 3jsp:B
3 3bdn:A 234 70 0.1694 0.0897 0.3000 0.25 3bdn:B, 2hnf:A, 2ho0:A, 1lli:A, 1lli:B, 1lmb:3, 1lmb:4, 1rio:A, 1rio:B
4 2y0c:A 461 112 0.2419 0.0651 0.2679 0.34 2y0c:B, 2y0c:C, 2y0c:D, 2y0d:A, 2y0d:B, 2y0d:C, 2y0d:D, 2y0e:A, 2y0e:B, 2y0e:C, 2y0e:D
5 1tex:D 247 45 0.1290 0.0648 0.3556 1.3 1tex:A, 1tex:B, 1tex:C
6 5uid:A 367 41 0.1129 0.0381 0.3415 3.2 5uid:D
7 3kvo:B 276 33 0.0887 0.0399 0.3333 3.6 3kvo:A
8 3aql:B 388 96 0.1935 0.0619 0.2500 4.6 3aqn:A, 3aqn:B
9 4xqk:A 1517 49 0.1290 0.0105 0.3265 6.3 4xqk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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