Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GLPSGASIVPLAQEHIPALRRINSLLLPVAYPDSFYHKALDPLASGLFSRAILWQDTNADPPKVVGGLICRLEPNPFLSV
TGEPTPVQLPADQPQRAPQAPKDTPFHAIYIQSLALLSPYRSLGLAAAALDHIIATAAVLPAAGSNIDARTIYAHVWTEN
EEGLKWYESRGFVKEGGEPVKGYYFKLRPDTAWIVRRHIGESAKLNDVVHHHHH

The query sequence (length=214) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7oju:A 214 214 1.0000 1.0000 1.0000 2.94e-158
2 6z00:A 156 197 0.2290 0.3141 0.2487 6.59e-19 6yzz:A, 6z00:B
3 2ob0:C 166 185 0.2243 0.2892 0.2595 9.93e-15 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
4 5hgz:A 211 189 0.2150 0.2180 0.2434 2.51e-05 5hh0:A, 5hh1:A, 5icv:A, 5icv:B, 5icw:A, 5icw:B, 5icw:C, 5icw:D
5 5c88:A 158 172 0.1963 0.2658 0.2442 0.004 6ag4:A, 6ag5:A, 5c88:B, 4lx9:A, 4r3k:A, 4r3l:A, 2x7b:A
6 6th0:A 176 64 0.0748 0.0909 0.2500 0.008 6tgx:A, 6tgx:B, 6th0:B
7 1tiq:A 173 91 0.0981 0.1214 0.2308 0.22 1tiq:B
8 6c95:B 160 94 0.1262 0.1688 0.2872 0.46 6ppl:C, 6pw9:C
9 7l1k:A 149 65 0.0935 0.1342 0.3077 1.5
10 6e1x:C 176 60 0.0935 0.1136 0.3333 1.5 5cnp:B, 5cnp:D, 5cnp:F, 6cx8:A, 6cx8:B, 6cx8:C, 6cx8:D, 6cx8:E, 6cx8:F, 6e1x:A, 6e1x:B, 6e1x:D, 4mhd:A, 4mhd:B, 4mhd:C, 4mi4:A, 4mi4:B, 4mi4:C, 4ncz:A, 4ncz:C, 4ncz:B, 4r57:A, 4r57:B, 4r57:C, 4r57:D, 4r57:E, 4r57:F, 4r57:G, 4r57:H, 4r57:I, 4r57:J, 4r57:K, 4r57:L, 4r87:A, 4r87:B, 4r87:C, 4r87:D, 4r87:E, 4r87:F, 4r87:G, 4r87:H, 4r87:I, 4r87:J, 4r87:K, 4r87:L, 5ug4:A, 5ug4:B, 5ug4:C, 4ygo:A, 4ygo:C, 4ygo:D, 4ygo:E
11 7mx2:A 152 101 0.1168 0.1645 0.2475 2.3 7rb3:A
12 1ffu:B 797 45 0.0888 0.0238 0.4222 4.0 1ffu:E, 1ffv:B, 1ffv:E
13 4pv6:G 154 60 0.0607 0.0844 0.2167 4.0 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
14 3bzn:A 430 62 0.1121 0.0558 0.3871 4.6
15 6q1h:A 240 50 0.0748 0.0667 0.3200 5.7 6q1h:B, 6q1h:C, 6q1h:E, 6q1h:F, 6q1h:G
16 6vfn:A 167 42 0.0701 0.0898 0.3571 5.8 6vfn:F, 6vfn:B, 6vfn:C, 6vfn:D, 6vfn:E, 6vfn:H, 6vfn:I, 6vfn:J, 6vfn:G, 6vfn:L, 6vfn:K
17 1bpw:A 503 69 0.0888 0.0378 0.2754 6.1 1bpw:B, 1bpw:C, 1bpw:D
18 3r7k:A 378 57 0.0701 0.0397 0.2632 7.8 3r7k:B, 3r7k:C, 3r7k:D
19 1knp:A 529 64 0.0794 0.0321 0.2656 8.8 1knr:A
20 3ecq:B 1347 43 0.0748 0.0119 0.3721 9.0 5a55:A, 5a56:A, 5a57:A, 5a58:A, 5a59:A, 5a5a:A, 3ecq:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218