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BioLiP
>protein
GLNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWE
EYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNR
YKELYYRLLTSPAADAGNTLMGQKP

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2sas:A 185 185 1.0000 1.0000 1.0000 1.94e-139
2 2ccm:A 190 182 0.3027 0.2947 0.3077 1.34e-25 2ccm:B, 5f6t:A, 4ndb:A, 4ndb:B, 4ndc:A, 4ndc:B, 4ndd:A, 4ndd:B
3 6kth:A 190 183 0.3081 0.3000 0.3115 7.58e-20
4 7wbo:A 193 171 0.2486 0.2383 0.2690 1.25e-13
5 7pjd:B 184 183 0.2378 0.2391 0.2404 3.30e-10 7pjd:A, 7pjd:C, 7pjd:D, 7pjd:E, 7pjd:F
6 2lhi:A 176 132 0.1622 0.1705 0.2273 0.002 1f55:A, 2lhh:A, 6oqq:B, 6oqq:D
7 7ukh:I 181 125 0.1892 0.1934 0.2800 0.002 7ukh:J, 7ukh:K, 7ukh:L
8 4nqg:A 197 140 0.1892 0.1777 0.2500 0.011 4nqg:B
9 2jnx:A 134 62 0.1027 0.1418 0.3065 0.036
10 5g4p:A 184 119 0.1676 0.1685 0.2605 0.054 5g4p:E, 5g58:A, 5g58:E, 5m6c:A, 5m6c:E
11 2jul:A 181 67 0.1135 0.1160 0.3134 0.076 2e6w:A
12 1s6i:A 182 79 0.1243 0.1264 0.2911 0.097
13 1jfk:A 134 68 0.1081 0.1493 0.2941 0.15 3li6:A, 3li6:D, 3li6:G, 3li6:J, 2m7m:A, 2m7n:A, 2nxq:A, 2nxq:B, 3ulg:A, 3ulg:B, 5xop:A, 5xop:B, 5xop:C, 5xop:D, 5xop:E, 5xop:F
14 1jfk:A 134 62 0.1081 0.1493 0.3226 3.1 3li6:A, 3li6:D, 3li6:G, 3li6:J, 2m7m:A, 2m7n:A, 2nxq:A, 2nxq:B, 3ulg:A, 3ulg:B, 5xop:A, 5xop:B, 5xop:C, 5xop:D, 5xop:E, 5xop:F
15 3akb:A 166 138 0.1730 0.1928 0.2319 0.18 3aka:A
16 3dd4:A 214 63 0.1135 0.0981 0.3333 0.22
17 2pmy:A 73 53 0.0811 0.2055 0.2830 0.22 2pmy:B
18 2scp:A 174 151 0.2000 0.2126 0.2450 0.29 2scp:B
19 1fpw:A 190 121 0.1568 0.1526 0.2397 0.34 2ju0:A
20 3q5i:A 470 31 0.0649 0.0255 0.3871 0.36
21 1s1e:A 181 87 0.1351 0.1381 0.2874 0.39 2i2r:E, 2i2r:F, 2i2r:G, 2i2r:H, 2i2r:M, 2i2r:N, 2i2r:O, 2i2r:P, 2nz0:A, 2nz0:C, 1s6c:A
22 3v7p:A 409 59 0.0973 0.0440 0.3051 0.52 4m51:A
23 4n5x:A 155 35 0.0649 0.0774 0.3429 0.57 4zcu:A, 4zcu:B, 4zcu:C, 4zcv:A, 4zcv:B, 4zcv:C, 4zcv:D
24 1bjf:A 181 119 0.1514 0.1547 0.2353 0.92 1bjf:B
25 2lcp:A 190 124 0.1514 0.1474 0.2258 0.97 5aeq:A, 5aeq:B, 5aer:A, 5afp:B, 5afp:A, 8ahy:B, 8alh:B, 8alm:B, 1g8i:A, 1g8i:B, 4guk:A, 4guk:C, 4guk:B, 4guk:D, 4ov2:A, 4ov2:B, 4ov2:C, 4ov2:D, 6qi4:B, 6qi4:C, 4yru:A, 4yru:B, 4yru:C, 4yru:D
26 4p5x:A 267 106 0.1622 0.1124 0.2830 1.4
27 7cnr:A 386 69 0.0865 0.0415 0.2319 1.5 7cnr:C, 7cnr:E, 7cnr:G, 7cns:A
28 5e37:A 313 75 0.1189 0.0703 0.2933 1.7 5e37:C
29 2lvj:A 77 78 0.0973 0.2338 0.2308 2.0 1k9u:A, 1k9u:B, 2lvk:A, 5otj:D, 5otj:C
30 2b9l:A 372 35 0.0595 0.0296 0.3143 2.1
31 1qls:A 95 49 0.0757 0.1474 0.2857 2.8
32 1z2i:A 350 47 0.0865 0.0457 0.3404 4.1 1z2i:B, 1z2i:C, 1z2i:D
33 2pas:A 109 44 0.0649 0.1101 0.2727 4.4 3pat:A, 1pva:A, 1pva:B
34 5z9t:A 499 84 0.1189 0.0441 0.2619 5.2 6a40:A, 7bz0:A, 5z9t:B
35 6lb7:A 304 52 0.0865 0.0526 0.3077 5.4 4nsd:A, 4nsd:B
36 1la0:A 161 159 0.1946 0.2236 0.2264 5.4 1aj4:A, 1ap4:A, 2ctn:A, 3ctn:A, 1dtl:A, 1fi5:A, 8fmm:A, 8fmm:D, 8fmn:A, 8fmn:D, 8fmo:A, 8fmo:D, 8fmp:A, 8fmp:D, 8fmq:A, 8fmq:D, 8fmr:A, 8fmr:D, 8fms:A, 8fms:D, 8fmt:A, 8fmt:D, 4gje:A, 1ih0:A, 1j1d:A, 1j1d:D, 1j1e:A, 1j1e:D, 2jxl:A, 2kdh:A, 2kfx:T, 2kgb:C, 6klt:A, 6klu:A, 2krd:C, 2l1r:A, 2l98:A, 1lxf:C, 2mkp:C, 2mle:C, 2mlf:C, 1mxl:C, 2mzp:C, 2n79:C, 1ozs:A, 1r2u:A, 1r6p:A, 3rv5:A, 3rv5:B, 3rv5:C, 3rv5:D, 1sbj:A, 1scv:A, 3sd6:A, 3swb:A, 7uti:U, 7uti:Z, 8uzx:C, 8uzy:C, 8v01:C, 8v0i:C, 8v0k:C, 1wrk:A, 1wrk:B, 1wrl:A, 1wrl:B, 1wrl:C, 1wrl:D, 1wrl:E, 1wrl:F, 4y99:A
37 4i5j:A 266 38 0.0649 0.0451 0.3158 6.0 4i5k:A, 4i5k:B
38 1ht9:A 76 39 0.0865 0.2105 0.4103 6.1 1b1g:A, 1ht9:B, 3icb:A, 4icb:A, 1ig5:A, 1igv:A, 1n65:A
39 6xqo:I 274 26 0.0649 0.0438 0.4615 6.6
40 1qx7:M 115 103 0.1027 0.1652 0.1845 6.8
41 6e9f:A 864 32 0.0703 0.0150 0.4062 8.6 6e9e:A
42 6b9r:C 446 40 0.0757 0.0314 0.3500 9.1 6b9r:A, 6b9r:D, 6b9r:B
43 3kpx:A 189 27 0.0595 0.0582 0.4074 9.4
44 2oq2:C 257 52 0.0595 0.0428 0.2115 9.7 2oq2:A, 2oq2:B, 2oq2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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