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BioLiP
>protein
GLLEEIAQLLEEIAKLLKKIAWLLKKIAQG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8qab:A 30 30 1.0000 1.0000 1.0000 1.48e-12 8qab:D
2 8qac:C 30 30 0.8667 0.8667 0.8667 4.82e-09
3 8b16:A 30 25 0.6000 0.6000 0.7200 9.98e-05 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
4 5ez8:E 30 26 0.6000 0.6000 0.6923 1.04e-04 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
5 7bat:B 30 26 0.5667 0.5667 0.6538 1.08e-04 7baw:D, 7baw:F
6 7a1t:C 30 26 0.6333 0.6333 0.7308 1.58e-04 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
7 7a1t:C 30 23 0.4667 0.4667 0.6087 8.6 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
8 4pnb:D 30 26 0.5333 0.5333 0.6154 2.68e-04
9 7bau:D 30 25 0.5000 0.5000 0.6000 5.41e-04 7bau:J, 7bau:E, 7bau:G, 7bau:I
10 7bau:D 30 23 0.3333 0.3333 0.4348 9.2 7bau:J, 7bau:E, 7bau:G, 7bau:I
11 6eiz:A 30 26 0.5667 0.5667 0.6538 0.001 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
12 6g6a:B 30 26 0.5000 0.5000 0.5769 0.003 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
13 6q5j:D 30 30 0.6333 0.6333 0.6333 0.004 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
14 4kvu:B 30 30 0.6000 0.6000 0.6000 0.008 4kvv:H, 4kvv:L
15 5ez9:F 30 25 0.4667 0.4667 0.5600 0.010 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
16 4h8m:A 30 30 0.6000 0.6000 0.6000 0.013
17 4pn8:H 30 24 0.4333 0.4333 0.5417 0.030 4pn8:J
18 6g68:H 30 26 0.4000 0.4000 0.4615 0.033 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
19 7udj:H 192 20 0.3000 0.0469 0.4500 3.7
20 5anb:K 1120 29 0.3333 0.0089 0.3448 5.1 5anc:K
21 6qd5:A 356 29 0.3333 0.0281 0.3448 7.1 8blp:A, 8blp:C, 8blp:B
22 6f37:A 113 19 0.4000 0.1062 0.6316 8.2 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A
23 3puk:A 552 16 0.3333 0.0181 0.6250 8.6 3puk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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