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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GLLAAQKARGLFKDFFPETGTKIELPELFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLGDPS
GRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQS
VQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITAVWLNRDK
TSPFELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGREGLDSAKRCTQAL

The query sequence (length=317) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2pid:B 324 324 1.0000 0.9784 0.9784 0.0 2pid:A, 3zxi:A, 3zxi:B
2 3ts1:A 317 329 0.4511 0.4511 0.4347 4.62e-80 4ts1:A, 4ts1:B, 1tya:E, 1tyb:E, 1tyd:E
3 1jil:A 323 330 0.4259 0.4180 0.4091 3.90e-77 1jii:A, 1jij:A, 1jik:A
4 5ihx:A 360 328 0.4164 0.3667 0.4024 1.60e-75
5 6hb5:B 417 299 0.3912 0.2974 0.4147 1.13e-71 7ap3:A, 7ap3:B, 6hb5:A, 6hb6:A, 6hb6:B, 6hb7:A, 6hb7:B, 6i5y:A, 6i5y:B, 4oud:A, 1vbm:A, 1vbm:B, 1vbn:A, 1vbn:B, 6wn2:A, 6wn2:B, 1wq3:A, 1wq4:A, 1x8x:A, 2yxn:A
6 6otj:B 431 300 0.3754 0.2761 0.3967 2.78e-70 6otj:A
7 5ijx:A 365 309 0.3880 0.3370 0.3981 6.88e-67
8 4ojm:X 382 340 0.3880 0.3220 0.3618 2.01e-64 2rkj:B, 2rkj:F, 2rkj:J, 2rkj:N, 1y42:X
9 6bqz:A 215 208 0.2019 0.2977 0.3077 9.05e-21 6bqz:B
10 1h3e:A 427 266 0.2208 0.1639 0.2632 7.83e-20
11 1h3f:B 406 266 0.1924 0.1502 0.2293 1.01e-10 1h3f:A
12 2cyb:A 319 232 0.1830 0.1818 0.2500 4.52e-06 2cyb:B
13 4nx2:A 313 204 0.1388 0.1406 0.2157 2.30e-04 2ag6:A, 7ckg:B, 3d6u:A, 3d6v:A, 2hgz:A, 4hjx:A, 4hjx:B, 4hpw:A, 1j1u:A, 5l7p:B, 3n2y:A, 3n2y:B, 5n5u:A, 4nda:A, 5nsf:B, 5nsf:A, 5nsf:C, 5nsf:D, 4pbr:A, 4pbs:A, 4pbt:A, 2pxh:A, 3qe4:A, 3qe4:B, 6wrk:A, 6wrn:A, 6wrq:A, 6wrt:A, 7ynw:A, 7ynw:B, 1zh0:A, 1zh6:A, 2zp1:A
14 3hv0:A 352 33 0.0505 0.0455 0.4848 1.7 3hv0:B
15 2q37:A 142 59 0.0536 0.1197 0.2881 2.5
16 4j2c:A 108 52 0.0536 0.1574 0.3269 3.2 4j2c:C
17 5mjv:B 239 176 0.1199 0.1590 0.2159 4.3 4z92:B
18 6ap6:A 264 45 0.0505 0.0606 0.3556 5.2 6ap6:B, 6ap7:A, 6ap7:B, 6o5j:A, 6o5j:B
19 3kt8:D 410 24 0.0284 0.0220 0.3750 8.4 3kt0:A, 3kt3:A, 3kt3:B, 3kt3:C, 3kt3:D, 3kt6:A, 3kt6:B, 3kt6:C, 3kt6:D, 3kt8:A, 3kt8:B, 3kt8:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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