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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GLFSQKSFLVLGFSNENESNIANIIKENAGKIMTVADYAVVPLLGCEVEATVGEVVTNTWLVTCIDYQTLFDPKSNPLFT
PVPVMTGMTPLEDCVISFSQCAGAEKESLTFLANLLGASVQEYFVRKSNAKKGMFASTHLILKERGGSKYEAAKKWNLPA
VTIAWLLETARTGKRADESHFLIENS

The query sequence (length=186) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rmm:D 190 190 0.9946 0.9737 0.9737 1.57e-135 6rmm:C, 3ueo:B, 3ueo:D, 3ueo:A, 3ueo:C
2 5u6k:E 191 190 0.8118 0.7906 0.7947 5.45e-111 5u6k:A, 5u6k:B, 5u6k:C, 5u6k:D
3 6rml:B 278 74 0.1505 0.1007 0.3784 7.10e-08
4 6rml:B 278 147 0.1828 0.1223 0.2313 1.1
5 6j0x:B 466 110 0.1559 0.0622 0.2636 0.016 6j0w:A, 6j0w:B, 6j0x:A, 6j0x:C, 6j0x:D
6 6hm3:A 183 47 0.0806 0.0820 0.3191 0.022 4bu0:A, 4bu1:A, 4bu1:B, 6hm4:A
7 2am1:A 454 68 0.1237 0.0507 0.3382 0.12 2am2:A, 3zm5:A, 3zm6:A
8 2z93:C 201 39 0.0699 0.0647 0.3333 5.1
9 8p0o:A 622 87 0.1022 0.0305 0.2184 5.3 8p0o:B, 8p0p:A, 8p0p:B, 8p0q:A, 8p0q:B
10 4r9x:A 225 38 0.0753 0.0622 0.3684 6.4 4r9x:B
11 9eq5:A 511 72 0.0968 0.0352 0.2500 7.7 9eq5:D, 9eq5:B, 9eq5:C
12 8ido:C 128 75 0.1075 0.1562 0.2667 9.1 8ido:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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