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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GLEEFFDDPKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLDKVVDSMDAL
DKVVQEREDALRLLQTGQERARPGAWRRDIFGRIIWHKFKQWVIPWHLNKRYNRKRFFALPYVDHFLRLEREKRARIKAR
KENLERKKAKILLKKFPHLAE

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8any:Y 181 181 1.0000 1.0000 1.0000 8.30e-132 7a5f:Y3, 7a5g:Y3, 7a5h:Y, 7a5i:Y3, 7a5j:Y, 7a5k:Y3, 4ce4:2, 6i9r:Y, 3j7y:Y, 3j9m:Y, 8k2a:Lu, 8k2b:Lu, 7l08:Y, 7l20:Y, 6nu2:Y, 6nu3:Y, 7o9k:Y, 7o9m:Y, 7odr:Y, 7ods:Y, 7odt:Y, 7of0:Y, 7of2:Y, 7of3:Y, 7of4:Y, 7of5:Y, 7of6:Y, 7of7:Y, 7og4:XY, 7oi6:Y, 7oi7:Y, 7oi8:Y, 7oi9:Y, 7oia:Y, 7oib:Y, 7oic:Y, 7oid:Y, 7oie:Y, 8oir:BF, 8oit:BF, 5ool:Y, 5oom:Y, 7pd3:Y, 8pk0:Y, 7po4:Y, 7qh6:Y, 7qh7:Y, 7qi4:Y, 7qi5:Y, 7qi6:Y, 8qsj:Y, 8qu1:Y, 8qu5:Y, 6vlz:Y, 6vmi:Y, 8xt0:Lu, 8xt1:Lu, 8xt2:Lu, 8xt3:Lu, 6zm5:Y, 6zm6:Y, 6zs9:XY, 6zsa:XY, 6zsb:XY, 6zsc:XY, 6zsd:XY, 6zse:XY, 6zsg:XY
2 6gaw:B2 179 179 0.8729 0.8827 0.8827 3.09e-116 5aj4:B2, 6gb2:B2, 7nqh:B2, 7nql:B2, 7nsh:B2, 7nsi:B2, 7nsj:B2, 8oin:BF, 8oiq:BF, 4v19:2, 6ydp:B2, 6ydw:B2
3 6xyw:Ay 111 87 0.2265 0.3694 0.4713 4.93e-16
4 6yxx:A2 463 93 0.2044 0.0799 0.3978 8.84e-13 7aoi:A2, 6hiv:A2, 6hix:A2, 6yxy:A2
5 7aih:R 472 115 0.2320 0.0890 0.3652 4.25e-11 7am2:R, 7ane:R
6 6z1p:AC 284 133 0.2597 0.1655 0.3534 4.85e-11
7 6ywe:T 180 109 0.2210 0.2222 0.3670 1.69e-09 6yws:T, 6ywv:T, 6ywx:T, 6ywy:T
8 7pkt:w 120 90 0.1878 0.2833 0.3778 1.36e-07
9 5mrc:T 216 28 0.0829 0.0694 0.5357 0.004 3j6b:T, 5mre:T, 5mrf:T
10 3gvh:A 318 127 0.1657 0.0943 0.2362 0.84 3gvh:B, 3gvh:C, 3gvh:D, 3gvi:A, 3gvi:B, 3gvi:C, 3gvi:D, 3gvi:E, 3gvi:F
11 6oz1:A 643 36 0.0773 0.0218 0.3889 1.7
12 5oa1:U 291 106 0.1436 0.0893 0.2453 1.9
13 7qjt:A 267 129 0.1713 0.1161 0.2403 4.6
14 6m9g:A 280 102 0.1713 0.1107 0.3039 7.1 6eg7:A, 6eg7:B, 6m9g:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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